Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3920 and GFF3921 are separated by 63 nucleotides GFF3921 and GFF3922 overlap by 8 nucleotides
GFF3920 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 833,155 to 835,548
GFF3920
GFF3921 - FIG152265: Sodium:solute symporter associated protein, at 835,612 to 835,887
GFF3921
GFF3922 - Acetate permease ActP (cation/acetate symporter), at 835,880 to 837,943
GFF3922
Position (kb) 835
836 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 834.832 kb on + strand, within GFF3920 at 834.833 kb on - strand, within GFF3920 at 834.833 kb on - strand, within GFF3920 at 834.955 kb on + strand, within GFF3920 at 835.414 kb on + strand at 835.414 kb on + strand at 835.414 kb on + strand at 835.414 kb on + strand at 835.415 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.816 kb on + strand, within GFF3921 at 835.816 kb on + strand, within GFF3921 at 835.817 kb on - strand, within GFF3921 at 835.898 kb on + strand at 835.899 kb on - strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.941 kb on - strand at 835.941 kb on - strand at 835.941 kb on - strand at 835.941 kb on - strand at 836.048 kb on + strand at 836.048 kb on + strand at 836.066 kb on + strand at 836.067 kb on - strand at 836.067 kb on - strand at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.094 kb on - strand, within GFF3922 at 836.094 kb on - strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.126 kb on + strand, within GFF3922 at 836.126 kb on + strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.244 kb on - strand, within GFF3922 at 836.318 kb on + strand, within GFF3922 at 836.319 kb on - strand, within GFF3922 at 836.333 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.409 kb on - strand, within GFF3922 at 836.409 kb on - strand, within GFF3922 at 836.426 kb on + strand, within GFF3922 at 836.427 kb on - strand, within GFF3922 at 836.427 kb on - strand, within GFF3922 at 836.561 kb on + strand, within GFF3922 at 836.561 kb on + strand, within GFF3922 at 836.561 kb on + strand, within GFF3922 at 836.562 kb on - strand, within GFF3922 at 836.609 kb on + strand, within GFF3922 at 836.646 kb on - strand, within GFF3922
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 834,832 + GFF3920 0.70 -1.0 834,833 - GFF3920 0.70 -0.2 834,833 - GFF3920 0.70 -0.2 834,955 + GFF3920 0.75 -1.0 835,414 + -2.3 835,414 + -4.0 835,414 + -2.4 835,414 + -2.0 835,415 - -2.3 835,572 - +2.0 835,572 - -1.0 835,572 - -0.4 835,572 - -0.1 835,575 + -0.6 835,575 + -0.4 835,575 + -0.2 835,575 + -0.8 835,816 + GFF3921 0.74 +0.7 835,816 + GFF3921 0.74 -0.4 835,817 - GFF3921 0.74 +0.2 835,898 + +0.4 835,899 - -0.4 835,940 + -0.3 835,940 + -0.5 835,940 + +0.4 835,940 + -1.4 835,940 + -1.2 835,940 + -1.2 835,941 - -0.4 835,941 - -0.4 835,941 - -0.1 835,941 - -0.5 836,048 + -0.1 836,048 + +0.3 836,066 + -0.0 836,067 - +0.4 836,067 - -0.1 836,093 + GFF3922 0.10 -0.4 836,093 + GFF3922 0.10 -0.2 836,093 + GFF3922 0.10 +0.0 836,093 + GFF3922 0.10 -0.8 836,093 + GFF3922 0.10 +0.0 836,094 - GFF3922 0.10 -1.1 836,094 - GFF3922 0.10 -0.4 836,096 + GFF3922 0.10 -0.5 836,096 + GFF3922 0.10 -1.2 836,096 + GFF3922 0.10 -0.6 836,096 + GFF3922 0.10 -0.4 836,097 - GFF3922 0.11 -1.2 836,097 - GFF3922 0.11 -0.1 836,097 - GFF3922 0.11 +0.4 836,097 - GFF3922 0.11 +0.7 836,097 - GFF3922 0.11 +1.0 836,097 - GFF3922 0.11 -0.0 836,097 - GFF3922 0.11 +1.4 836,126 + GFF3922 0.12 +0.6 836,126 + GFF3922 0.12 -2.3 836,196 - GFF3922 0.15 +1.0 836,196 - GFF3922 0.15 +0.3 836,196 - GFF3922 0.15 -0.8 836,243 + GFF3922 0.18 -1.0 836,243 + GFF3922 0.18 -0.3 836,243 + GFF3922 0.18 +0.0 836,243 + GFF3922 0.18 -0.3 836,244 - GFF3922 0.18 -0.2 836,318 + GFF3922 0.21 -0.4 836,319 - GFF3922 0.21 -0.5 836,333 + GFF3922 0.22 +2.4 836,408 + GFF3922 0.26 -2.2 836,408 + GFF3922 0.26 -1.4 836,408 + GFF3922 0.26 +1.1 836,408 + GFF3922 0.26 -0.2 836,408 + GFF3922 0.26 +0.5 836,409 - GFF3922 0.26 +0.1 836,409 - GFF3922 0.26 -0.5 836,426 + GFF3922 0.26 +0.4 836,427 - GFF3922 0.27 -1.0 836,427 - GFF3922 0.27 -0.3 836,561 + GFF3922 0.33 -0.0 836,561 + GFF3922 0.33 -0.2 836,561 + GFF3922 0.33 -1.0 836,562 - GFF3922 0.33 -0.3 836,609 + GFF3922 0.35 -0.9 836,646 - GFF3922 0.37 +0.1
Or see this region's nucleotide sequence