Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3878 and GFF3879 are separated by 127 nucleotides GFF3879 and GFF3880 are separated by 98 nucleotides
GFF3878 - Quinone oxidoreductase (EC 1.6.5.5), at 792,588 to 793,574
GFF3878
GFF3879 - 5-nucleotidase SurE (EC 3.1.3.5), at 793,702 to 794,481
GFF3879
GFF3880 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 794,580 to 795,347
GFF3880
Position (kb) 793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.862 kb on + strand, within GFF3878 at 792.924 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.004 kb on - strand, within GFF3878 at 793.204 kb on + strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.423 kb on + strand, within GFF3878 at 793.423 kb on + strand, within GFF3878 at 793.423 kb on + strand, within GFF3878 at 793.615 kb on + strand at 793.689 kb on + strand at 793.690 kb on - strand at 793.709 kb on + strand at 793.709 kb on + strand at 793.759 kb on + strand at 793.855 kb on + strand, within GFF3879 at 793.855 kb on + strand, within GFF3879 at 793.855 kb on + strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.856 kb on - strand, within GFF3879 at 793.885 kb on + strand, within GFF3879 at 794.005 kb on + strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.006 kb on - strand, within GFF3879 at 794.038 kb on + strand, within GFF3879 at 794.039 kb on - strand, within GFF3879 at 794.305 kb on + strand, within GFF3879 at 794.305 kb on + strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.306 kb on - strand, within GFF3879 at 794.378 kb on - strand, within GFF3879 at 794.841 kb on + strand, within GFF3880 at 794.841 kb on + strand, within GFF3880 at 794.842 kb on - strand, within GFF3880 at 794.842 kb on - strand, within GFF3880 at 794.842 kb on - strand, within GFF3880 at 794.842 kb on - strand, within GFF3880 at 795.018 kb on + strand, within GFF3880 at 795.018 kb on + strand, within GFF3880 at 795.019 kb on - strand, within GFF3880 at 795.019 kb on - strand, within GFF3880 at 795.124 kb on + strand, within GFF3880 at 795.142 kb on - strand, within GFF3880 at 795.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 792,706 + GFF3878 0.12 +0.2 792,706 + GFF3878 0.12 +1.0 792,706 + GFF3878 0.12 +0.0 792,706 + GFF3878 0.12 +1.4 792,707 - GFF3878 0.12 +2.2 792,707 - GFF3878 0.12 +0.3 792,707 - GFF3878 0.12 -0.9 792,707 - GFF3878 0.12 -0.2 792,707 - GFF3878 0.12 -0.4 792,707 - GFF3878 0.12 +0.3 792,707 - GFF3878 0.12 -0.4 792,862 + GFF3878 0.28 -0.1 792,924 + GFF3878 0.34 -1.3 792,925 + GFF3878 0.34 -0.5 792,925 + GFF3878 0.34 -0.5 792,925 + GFF3878 0.34 -0.5 793,003 + GFF3878 0.42 +1.7 793,003 + GFF3878 0.42 +0.8 793,003 + GFF3878 0.42 -1.0 793,003 + GFF3878 0.42 -1.0 793,004 - GFF3878 0.42 -0.0 793,204 + GFF3878 0.62 -0.0 793,205 - GFF3878 0.63 +0.1 793,205 - GFF3878 0.63 -0.6 793,205 - GFF3878 0.63 -0.1 793,205 - GFF3878 0.63 -0.7 793,205 - GFF3878 0.63 +0.1 793,423 + GFF3878 0.85 -1.1 793,423 + GFF3878 0.85 -0.5 793,423 + GFF3878 0.85 +0.2 793,615 + +0.2 793,689 + +0.5 793,690 - -0.8 793,709 + -0.6 793,709 + -1.0 793,759 + -0.6 793,855 + GFF3879 0.20 +0.2 793,855 + GFF3879 0.20 -0.6 793,855 + GFF3879 0.20 -0.0 793,856 - GFF3879 0.20 +0.0 793,856 - GFF3879 0.20 -0.8 793,856 - GFF3879 0.20 -1.2 793,885 + GFF3879 0.23 -0.2 794,005 + GFF3879 0.39 -1.6 794,006 - GFF3879 0.39 -1.4 794,006 - GFF3879 0.39 -0.7 794,006 - GFF3879 0.39 -1.4 794,038 + GFF3879 0.43 -0.8 794,039 - GFF3879 0.43 -1.5 794,305 + GFF3879 0.77 -0.9 794,305 + GFF3879 0.77 -1.0 794,306 - GFF3879 0.77 -0.2 794,306 - GFF3879 0.77 -1.0 794,306 - GFF3879 0.77 -0.6 794,306 - GFF3879 0.77 -0.6 794,306 - GFF3879 0.77 -2.6 794,306 - GFF3879 0.77 -1.7 794,306 - GFF3879 0.77 -0.5 794,378 - GFF3879 0.87 -1.6 794,841 + GFF3880 0.34 -2.0 794,841 + GFF3880 0.34 -0.8 794,842 - GFF3880 0.34 -1.4 794,842 - GFF3880 0.34 -1.5 794,842 - GFF3880 0.34 -0.4 794,842 - GFF3880 0.34 -0.2 795,018 + GFF3880 0.57 -2.1 795,018 + GFF3880 0.57 -0.6 795,019 - GFF3880 0.57 -3.0 795,019 - GFF3880 0.57 -0.8 795,124 + GFF3880 0.71 -1.3 795,142 - GFF3880 0.73 -2.2 795,329 - -0.5
Or see this region's nucleotide sequence