Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3671 and GFF3672 are separated by 299 nucleotides GFF3672 and GFF3673 are separated by 140 nucleotides
GFF3671 - Nitrate ABC transporter, nitrate-binding protein, at 559,478 to 560,791
GFF3671
GFF3672 - Response regulator NasT, at 561,091 to 562,389
GFF3672
GFF3673 - TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 562,530 to 563,636
GFF3673
Position (kb) 561
562
563 Strain fitness (log2 ratio) -1
0
1 at 560.196 kb on + strand, within GFF3671 at 560.199 kb on + strand, within GFF3671 at 560.247 kb on + strand, within GFF3671 at 560.247 kb on + strand, within GFF3671 at 560.247 kb on + strand, within GFF3671 at 560.248 kb on - strand, within GFF3671 at 560.248 kb on - strand, within GFF3671 at 560.409 kb on + strand, within GFF3671 at 560.409 kb on + strand, within GFF3671 at 560.409 kb on + strand, within GFF3671 at 560.514 kb on + strand, within GFF3671 at 560.515 kb on - strand, within GFF3671 at 561.073 kb on - strand at 561.485 kb on + strand, within GFF3672 at 561.485 kb on + strand, within GFF3672 at 561.485 kb on + strand, within GFF3672 at 561.485 kb on + strand, within GFF3672 at 561.486 kb on - strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.983 kb on + strand, within GFF3672 at 561.984 kb on - strand, within GFF3672 at 561.984 kb on - strand, within GFF3672 at 561.984 kb on - strand, within GFF3672 at 562.071 kb on - strand, within GFF3672 at 562.143 kb on + strand, within GFF3672 at 562.143 kb on + strand, within GFF3672 at 562.144 kb on - strand, within GFF3672 at 562.518 kb on + strand at 562.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 560,196 + GFF3671 0.55 +0.8 560,199 + GFF3671 0.55 -0.8 560,247 + GFF3671 0.59 +0.6 560,247 + GFF3671 0.59 -0.5 560,247 + GFF3671 0.59 +0.0 560,248 - GFF3671 0.59 +0.0 560,248 - GFF3671 0.59 -0.8 560,409 + GFF3671 0.71 -0.3 560,409 + GFF3671 0.71 +0.3 560,409 + GFF3671 0.71 -0.2 560,514 + GFF3671 0.79 -0.5 560,515 - GFF3671 0.79 +0.5 561,073 - -0.2 561,485 + GFF3672 0.30 +0.1 561,485 + GFF3672 0.30 -0.1 561,485 + GFF3672 0.30 -0.5 561,485 + GFF3672 0.30 +0.5 561,486 - GFF3672 0.30 -0.1 561,983 + GFF3672 0.69 -0.1 561,983 + GFF3672 0.69 -0.3 561,983 + GFF3672 0.69 -1.0 561,983 + GFF3672 0.69 +0.5 561,983 + GFF3672 0.69 +0.4 561,983 + GFF3672 0.69 -0.4 561,983 + GFF3672 0.69 +1.1 561,984 - GFF3672 0.69 +1.1 561,984 - GFF3672 0.69 -0.1 561,984 - GFF3672 0.69 -1.6 562,071 - GFF3672 0.75 -0.2 562,143 + GFF3672 0.81 -0.1 562,143 + GFF3672 0.81 -0.4 562,144 - GFF3672 0.81 -0.6 562,518 + +0.3 562,519 - -0.3
Or see this region's nucleotide sequence