Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3622 and GFF3623 are separated by 5 nucleotides GFF3623 and GFF3624 are separated by 34 nucleotides GFF3624 and GFF3625 are separated by 25 nucleotides GFF3625 and GFF3626 are separated by 77 nucleotides
GFF3622 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 509,885 to 510,274
GFF3622
GFF3623 - Endoribonuclease L-PSP, at 510,280 to 510,753
GFF3623
GFF3624 - Tricarboxylate transport protein TctC, at 510,788 to 511,759
GFF3624
GFF3625 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 511,785 to 512,558
GFF3625
GFF3626 - L-lactate dehydrogenase (EC 1.1.2.3), at 512,636 to 513,799
GFF3626
Position (kb) 510
511
512 Strain fitness (log2 ratio) -2
-1
0
1 at 509.903 kb on + strand at 509.903 kb on + strand at 509.903 kb on + strand at 509.903 kb on + strand at 509.904 kb on - strand at 509.904 kb on - strand at 509.990 kb on + strand, within GFF3622 at 509.991 kb on - strand, within GFF3622 at 510.158 kb on + strand, within GFF3622 at 510.316 kb on - strand at 510.475 kb on + strand, within GFF3623 at 510.475 kb on + strand, within GFF3623 at 510.575 kb on - strand, within GFF3623 at 510.610 kb on + strand, within GFF3623 at 510.706 kb on + strand at 510.706 kb on + strand at 510.707 kb on - strand at 510.707 kb on - strand at 511.046 kb on + strand, within GFF3624 at 511.112 kb on + strand, within GFF3624 at 511.112 kb on + strand, within GFF3624 at 511.113 kb on - strand, within GFF3624 at 511.250 kb on + strand, within GFF3624 at 511.251 kb on - strand, within GFF3624 at 511.338 kb on - strand, within GFF3624 at 511.338 kb on - strand, within GFF3624 at 511.542 kb on - strand, within GFF3624 at 512.268 kb on + strand, within GFF3625 at 512.412 kb on + strand, within GFF3625 at 512.412 kb on + strand, within GFF3625 at 512.412 kb on + strand, within GFF3625 at 512.413 kb on - strand, within GFF3625 at 512.508 kb on + strand at 512.508 kb on + strand at 512.720 kb on + strand at 512.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 509,903 + -0.1 509,903 + -1.8 509,903 + -0.5 509,903 + -0.0 509,904 - -0.5 509,904 - -0.3 509,990 + GFF3622 0.27 -0.6 509,991 - GFF3622 0.27 -0.7 510,158 + GFF3622 0.70 -0.2 510,316 - -1.2 510,475 + GFF3623 0.41 -0.2 510,475 + GFF3623 0.41 +0.5 510,575 - GFF3623 0.62 +0.2 510,610 + GFF3623 0.70 +0.1 510,706 + -0.3 510,706 + +0.5 510,707 - +0.9 510,707 - +0.2 511,046 + GFF3624 0.27 +0.6 511,112 + GFF3624 0.33 -0.8 511,112 + GFF3624 0.33 -0.9 511,113 - GFF3624 0.33 +0.8 511,250 + GFF3624 0.48 -0.5 511,251 - GFF3624 0.48 +1.3 511,338 - GFF3624 0.57 +0.2 511,338 - GFF3624 0.57 -0.5 511,542 - GFF3624 0.78 -0.9 512,268 + GFF3625 0.62 -0.2 512,412 + GFF3625 0.81 -0.4 512,412 + GFF3625 0.81 +0.3 512,412 + GFF3625 0.81 -0.8 512,413 - GFF3625 0.81 -0.1 512,508 + +0.2 512,508 + +1.0 512,720 + +0.4 512,721 - -1.2
Or see this region's nucleotide sequence