Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3613 and GFF3614 are separated by 102 nucleotides GFF3614 and GFF3615 are separated by 29 nucleotides
GFF3613 - hypothetical protein, at 501,891 to 502,031
GFF3613
GFF3614 - putative exported protein, at 502,134 to 503,135
GFF3614
GFF3615 - hypothetical protein, at 503,165 to 504,112
GFF3615
Position (kb) 502
503
504 Strain fitness (log2 ratio) -1
0
1
2 at 501.167 kb on - strand at 501.205 kb on + strand at 501.206 kb on - strand at 501.232 kb on + strand at 501.232 kb on + strand at 501.236 kb on - strand at 501.236 kb on - strand at 501.314 kb on - strand at 501.490 kb on + strand at 501.693 kb on + strand at 501.694 kb on - strand at 501.694 kb on - strand at 501.736 kb on + strand at 501.737 kb on - strand at 501.737 kb on - strand at 501.811 kb on + strand at 501.811 kb on + strand at 501.811 kb on + strand at 501.811 kb on + strand at 501.812 kb on - strand at 501.812 kb on - strand at 501.812 kb on - strand at 502.017 kb on + strand, within GFF3613 at 502.018 kb on - strand at 502.195 kb on + strand at 502.261 kb on + strand, within GFF3614 at 502.262 kb on - strand, within GFF3614 at 502.262 kb on - strand, within GFF3614 at 502.370 kb on - strand, within GFF3614 at 502.561 kb on + strand, within GFF3614 at 502.561 kb on + strand, within GFF3614 at 502.561 kb on + strand, within GFF3614 at 502.624 kb on + strand, within GFF3614 at 502.625 kb on - strand, within GFF3614 at 502.652 kb on - strand, within GFF3614 at 502.684 kb on + strand, within GFF3614 at 502.685 kb on - strand, within GFF3614 at 502.789 kb on + strand, within GFF3614 at 503.434 kb on - strand, within GFF3615 at 503.512 kb on - strand, within GFF3615 at 503.664 kb on + strand, within GFF3615 at 503.706 kb on + strand, within GFF3615 at 503.707 kb on - strand, within GFF3615 at 503.872 kb on - strand, within GFF3615 at 503.872 kb on - strand, within GFF3615 at 504.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 501,167 - +0.2 501,205 + +0.4 501,206 - +0.0 501,232 + +0.7 501,232 + +0.1 501,236 - +0.2 501,236 - -0.9 501,314 - -0.1 501,490 + +0.1 501,693 + +1.4 501,694 - -0.5 501,694 - +0.8 501,736 + +1.4 501,737 - +0.7 501,737 - +0.4 501,811 + +1.4 501,811 + +1.1 501,811 + -0.6 501,811 + +0.2 501,812 - -0.2 501,812 - +0.1 501,812 - +1.9 502,017 + GFF3613 0.89 -0.3 502,018 - -0.2 502,195 + -0.5 502,261 + GFF3614 0.13 +0.4 502,262 - GFF3614 0.13 +1.4 502,262 - GFF3614 0.13 -0.1 502,370 - GFF3614 0.24 +0.7 502,561 + GFF3614 0.43 +0.8 502,561 + GFF3614 0.43 +0.4 502,561 + GFF3614 0.43 -0.2 502,624 + GFF3614 0.49 -1.2 502,625 - GFF3614 0.49 +0.4 502,652 - GFF3614 0.52 -0.2 502,684 + GFF3614 0.55 -0.2 502,685 - GFF3614 0.55 +0.0 502,789 + GFF3614 0.65 -0.2 503,434 - GFF3615 0.28 -0.1 503,512 - GFF3615 0.37 +1.6 503,664 + GFF3615 0.53 +1.0 503,706 + GFF3615 0.57 +0.9 503,707 - GFF3615 0.57 +0.4 503,872 - GFF3615 0.75 +0.2 503,872 - GFF3615 0.75 -1.0 504,048 + -0.6
Or see this region's nucleotide sequence