Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3562

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3561 and GFF3562 are separated by 64 nucleotidesGFF3562 and GFF3563 overlap by 23 nucleotidesGFF3563 and GFF3564 are separated by 103 nucleotides GFF3561 - Glutamate--cysteine ligase (EC 6.3.2.2), at 452,336 to 453,895 GFF3561 GFF3562 - Dienelactone hydrolase family, at 453,960 to 454,886 GFF3562 GFF3563 - NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2, at 454,864 to 455,499 GFF3563 GFF3564 - Transcriptional regulator, TetR family, at 455,603 to 456,184 GFF3564 Position (kb) 453 454 455Strain fitness (log2 ratio) -2 -1 0 1 2at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.960 kb on + strand, within GFF3561at 452.961 kb on - strand, within GFF3561at 452.961 kb on - strand, within GFF3561at 453.038 kb on + strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.039 kb on - strand, within GFF3561at 453.101 kb on + strand, within GFF3561at 453.101 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.137 kb on + strand, within GFF3561at 453.138 kb on - strand, within GFF3561at 453.182 kb on + strand, within GFF3561at 453.182 kb on + strand, within GFF3561at 453.183 kb on - strand, within GFF3561at 453.213 kb on - strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.260 kb on + strand, within GFF3561at 453.261 kb on - strand, within GFF3561at 453.261 kb on - strand, within GFF3561at 453.750 kb on - strandat 453.824 kb on + strandat 453.825 kb on - strandat 453.836 kb on + strandat 453.836 kb on + strandat 453.836 kb on + strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.837 kb on - strandat 453.908 kb on - strandat 453.908 kb on - strandat 453.908 kb on - strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.959 kb on + strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 453.960 kb on - strandat 454.047 kb on + strandat 454.047 kb on + strandat 454.047 kb on + strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.048 kb on - strandat 454.200 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.248 kb on + strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.249 kb on - strand, within GFF3562at 454.371 kb on + strand, within GFF3562at 454.372 kb on - strand, within GFF3562at 454.554 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.617 kb on + strand, within GFF3562at 454.618 kb on - strand, within GFF3562at 454.621 kb on - strand, within GFF3562at 454.621 kb on - strand, within GFF3562at 454.722 kb on + strand, within GFF3562at 454.722 kb on + strand, within GFF3562at 454.723 kb on - strand, within GFF3562at 454.723 kb on - strand, within GFF3562at 454.755 kb on + strand, within GFF3562at 454.755 kb on + strand, within GFF3562at 455.084 kb on + strand, within GFF3563at 455.084 kb on + strand, within GFF3563at 455.084 kb on + strand, within GFF3563at 455.085 kb on - strand, within GFF3563at 455.331 kb on - strand, within GFF3563at 455.529 kb on + strandat 455.530 kb on - strandat 455.530 kb on - strandat 455.530 kb on - strandat 455.544 kb on - strandat 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.753 kb on + strand, within GFF3564at 455.754 kb on - strand, within GFF3564at 455.804 kb on + strand, within GFF3564at 455.804 kb on + strand, within GFF3564at 455.805 kb on - strand, within GFF3564

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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452,960 + GFF3561 0.40 -0.0
452,960 + GFF3561 0.40 -1.2
452,960 + GFF3561 0.40 -1.0
452,960 + GFF3561 0.40 -0.6
452,960 + GFF3561 0.40 -0.3
452,960 + GFF3561 0.40 -1.8
452,960 + GFF3561 0.40 -0.4
452,960 + GFF3561 0.40 -0.7
452,961 - GFF3561 0.40 +0.4
452,961 - GFF3561 0.40 +0.1
453,038 + GFF3561 0.45 -0.6
453,039 - GFF3561 0.45 -0.0
453,039 - GFF3561 0.45 -1.5
453,039 - GFF3561 0.45 +1.0
453,039 - GFF3561 0.45 -0.6
453,039 - GFF3561 0.45 -0.8
453,101 + GFF3561 0.49 +0.1
453,101 + GFF3561 0.49 -1.3
453,137 + GFF3561 0.51 +0.5
453,137 + GFF3561 0.51 -0.2
453,137 + GFF3561 0.51 -0.7
453,138 - GFF3561 0.51 -0.9
453,182 + GFF3561 0.54 -0.3
453,182 + GFF3561 0.54 -0.0
453,183 - GFF3561 0.54 -0.8
453,213 - GFF3561 0.56 -0.4
453,260 + GFF3561 0.59 +0.0
453,260 + GFF3561 0.59 +1.8
453,260 + GFF3561 0.59 -0.7
453,261 - GFF3561 0.59 -0.3
453,261 - GFF3561 0.59 -0.3
453,750 - -0.5
453,824 + -2.6
453,825 - -0.5
453,836 + +0.6
453,836 + -0.4
453,836 + -1.2
453,837 - -0.1
453,837 - +1.5
453,837 - -0.6
453,837 - -2.1
453,837 - +1.4
453,837 - -0.2
453,837 - +0.0
453,908 - -1.1
453,908 - -0.2
453,908 - +0.1
453,959 + +1.4
453,959 + -0.2
453,959 + -0.1
453,959 + +0.1
453,959 + +0.9
453,959 + -1.1
453,959 + -0.3
453,960 - -0.1
453,960 - +2.4
453,960 - -1.0
453,960 - +0.6
453,960 - -0.3
453,960 - -0.4
453,960 - -0.6
453,960 - +0.9
453,960 - +0.4
453,960 - -0.1
453,960 - -0.2
454,047 + +0.3
454,047 + -0.6
454,047 + +0.1
454,048 - +0.2
454,048 - -0.2
454,048 - -0.8
454,048 - +0.7
454,048 - -0.2
454,200 + GFF3562 0.26 +0.0
454,248 + GFF3562 0.31 +0.6
454,248 + GFF3562 0.31 +0.4
454,248 + GFF3562 0.31 +0.0
454,248 + GFF3562 0.31 +0.1
454,248 + GFF3562 0.31 +1.4
454,249 - GFF3562 0.31 -0.6
454,249 - GFF3562 0.31 -0.0
454,249 - GFF3562 0.31 -0.3
454,371 + GFF3562 0.44 -0.8
454,372 - GFF3562 0.44 +1.0
454,554 + GFF3562 0.64 +0.1
454,617 + GFF3562 0.71 +0.6
454,617 + GFF3562 0.71 -0.2
454,617 + GFF3562 0.71 +1.2
454,618 - GFF3562 0.71 -0.5
454,621 - GFF3562 0.71 +1.4
454,621 - GFF3562 0.71 +0.1
454,722 + GFF3562 0.82 -0.3
454,722 + GFF3562 0.82 -0.1
454,723 - GFF3562 0.82 -0.9
454,723 - GFF3562 0.82 +0.3
454,755 + GFF3562 0.86 -1.5
454,755 + GFF3562 0.86 -0.1
455,084 + GFF3563 0.35 -0.1
455,084 + GFF3563 0.35 +0.0
455,084 + GFF3563 0.35 +0.5
455,085 - GFF3563 0.35 -0.5
455,331 - GFF3563 0.73 +0.9
455,529 + +0.5
455,530 - -0.0
455,530 - +1.8
455,530 - -0.2
455,544 - -0.4
455,753 + GFF3564 0.26 +0.4
455,753 + GFF3564 0.26 -0.4
455,753 + GFF3564 0.26 -1.0
455,753 + GFF3564 0.26 -0.2
455,753 + GFF3564 0.26 -0.4
455,753 + GFF3564 0.26 +0.3
455,754 - GFF3564 0.26 +1.8
455,804 + GFF3564 0.35 +0.0
455,804 + GFF3564 0.35 -0.5
455,805 - GFF3564 0.35 -0.0

Or see this region's nucleotide sequence