Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3378 and GFF3379 are separated by 125 nucleotides GFF3379 and GFF3380 are separated by 85 nucleotides GFF3380 and GFF3381 overlap by 17 nucleotides GFF3381 and GFF3382 overlap by 18 nucleotides GFF3382 and GFF3383 are separated by 70 nucleotides GFF3383 and GFF3384 are separated by 26 nucleotides
GFF3378 - transcriptional regulator, XRE family, at 263,070 to 263,885
GFF3378
GFF3379 - putative integral membrane protein, at 264,011 to 264,424
GFF3379
GFF3380 - hypothetical protein, at 264,510 to 264,668
GFF3380
GFF3381 - hypothetical protein, at 264,652 to 264,768
GFF3381
GFF3382 - Aconitate hydratase (EC 4.2.1.3), at 264,751 to 267,615
GFF3382
GFF3383 - peptidase S1 and S6, chymotrypsin/Hap, at 267,686 to 268,588
GFF3383
GFF3384 - MoxR-like ATPase in aerotolerance operon, at 268,615 to 269,616
GFF3384
Position (kb) 264
265
266
267
268 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.755 kb on + strand, within GFF3378 at 263.889 kb on - strand at 264.127 kb on + strand, within GFF3379 at 264.128 kb on - strand, within GFF3379 at 264.185 kb on + strand, within GFF3379 at 264.334 kb on + strand, within GFF3379 at 264.335 kb on + strand, within GFF3379 at 264.335 kb on + strand, within GFF3379 at 264.335 kb on + strand, within GFF3379 at 264.336 kb on - strand, within GFF3379 at 264.467 kb on - strand at 264.695 kb on + strand, within GFF3381 at 264.696 kb on - strand, within GFF3381 at 264.696 kb on - strand, within GFF3381 at 264.835 kb on + strand at 264.835 kb on + strand at 265.238 kb on - strand, within GFF3382 at 265.327 kb on + strand, within GFF3382 at 265.327 kb on + strand, within GFF3382 at 265.328 kb on - strand, within GFF3382 at 265.328 kb on - strand, within GFF3382 at 265.328 kb on - strand, within GFF3382 at 265.328 kb on - strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.363 kb on + strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.364 kb on - strand, within GFF3382 at 265.367 kb on - strand, within GFF3382 at 265.367 kb on - strand, within GFF3382 at 265.483 kb on + strand, within GFF3382 at 265.483 kb on + strand, within GFF3382 at 265.484 kb on - strand, within GFF3382 at 265.732 kb on + strand, within GFF3382 at 265.783 kb on + strand, within GFF3382 at 265.783 kb on + strand, within GFF3382 at 265.784 kb on - strand, within GFF3382 at 265.784 kb on - strand, within GFF3382 at 265.834 kb on + strand, within GFF3382 at 266.008 kb on + strand, within GFF3382 at 266.009 kb on - strand, within GFF3382 at 266.329 kb on + strand, within GFF3382 at 266.329 kb on + strand, within GFF3382 at 266.330 kb on - strand, within GFF3382 at 266.330 kb on - strand, within GFF3382 at 266.356 kb on + strand, within GFF3382 at 266.356 kb on + strand, within GFF3382 at 266.567 kb on - strand, within GFF3382 at 266.567 kb on - strand, within GFF3382 at 266.567 kb on - strand, within GFF3382 at 266.677 kb on + strand, within GFF3382 at 266.677 kb on + strand, within GFF3382 at 266.678 kb on - strand, within GFF3382 at 266.714 kb on - strand, within GFF3382 at 266.792 kb on - strand, within GFF3382 at 266.812 kb on + strand, within GFF3382 at 266.812 kb on + strand, within GFF3382 at 266.812 kb on + strand, within GFF3382 at 266.812 kb on + strand, within GFF3382 at 266.812 kb on + strand, within GFF3382 at 266.812 kb on + strand, within GFF3382 at 266.812 kb on + strand, within GFF3382 at 266.812 kb on + strand, within GFF3382 at 266.813 kb on - strand, within GFF3382 at 266.813 kb on - strand, within GFF3382 at 266.813 kb on - strand, within GFF3382 at 267.022 kb on + strand, within GFF3382 at 267.145 kb on + strand, within GFF3382 at 267.146 kb on - strand, within GFF3382 at 267.146 kb on - strand, within GFF3382 at 267.146 kb on - strand, within GFF3382 at 267.146 kb on - strand, within GFF3382 at 267.146 kb on - strand, within GFF3382 at 267.205 kb on + strand, within GFF3382 at 267.251 kb on - strand, within GFF3382 at 267.559 kb on + strand at 267.559 kb on + strand at 267.559 kb on + strand at 267.559 kb on + strand at 267.559 kb on + strand at 267.560 kb on - strand at 267.560 kb on - strand at 267.560 kb on - strand at 267.586 kb on + strand at 267.586 kb on + strand at 267.587 kb on - strand at 267.689 kb on + strand at 267.690 kb on - strand at 267.690 kb on - strand at 267.690 kb on - strand at 267.690 kb on - strand at 268.023 kb on - strand, within GFF3383 at 268.294 kb on - strand, within GFF3383 at 268.585 kb on - strand at 268.587 kb on - strand at 268.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 263,755 + GFF3378 0.84 -0.2 263,889 - -0.6 264,127 + GFF3379 0.28 +1.3 264,128 - GFF3379 0.28 +2.2 264,185 + GFF3379 0.42 +0.8 264,334 + GFF3379 0.78 +0.7 264,335 + GFF3379 0.78 +0.2 264,335 + GFF3379 0.78 -0.4 264,335 + GFF3379 0.78 -0.4 264,336 - GFF3379 0.79 +0.9 264,467 - -0.6 264,695 + GFF3381 0.37 -0.6 264,696 - GFF3381 0.38 +0.7 264,696 - GFF3381 0.38 -0.7 264,835 + -0.3 264,835 + -0.5 265,238 - GFF3382 0.17 -0.2 265,327 + GFF3382 0.20 +0.5 265,327 + GFF3382 0.20 -0.2 265,328 - GFF3382 0.20 +1.1 265,328 - GFF3382 0.20 -0.3 265,328 - GFF3382 0.20 +0.8 265,328 - GFF3382 0.20 +0.6 265,363 + GFF3382 0.21 +1.8 265,363 + GFF3382 0.21 +0.3 265,363 + GFF3382 0.21 -0.7 265,363 + GFF3382 0.21 -0.2 265,363 + GFF3382 0.21 -0.2 265,363 + GFF3382 0.21 -0.5 265,363 + GFF3382 0.21 +0.3 265,363 + GFF3382 0.21 -0.2 265,364 - GFF3382 0.21 +0.6 265,364 - GFF3382 0.21 -0.3 265,364 - GFF3382 0.21 +0.3 265,364 - GFF3382 0.21 -0.6 265,364 - GFF3382 0.21 +1.1 265,367 - GFF3382 0.22 +2.3 265,367 - GFF3382 0.22 +1.6 265,483 + GFF3382 0.26 -0.7 265,483 + GFF3382 0.26 +0.6 265,484 - GFF3382 0.26 +0.5 265,732 + GFF3382 0.34 -0.3 265,783 + GFF3382 0.36 +0.0 265,783 + GFF3382 0.36 -0.5 265,784 - GFF3382 0.36 +0.3 265,784 - GFF3382 0.36 -0.4 265,834 + GFF3382 0.38 -1.0 266,008 + GFF3382 0.44 +0.9 266,009 - GFF3382 0.44 +0.2 266,329 + GFF3382 0.55 -0.2 266,329 + GFF3382 0.55 -0.0 266,330 - GFF3382 0.55 +0.2 266,330 - GFF3382 0.55 +1.1 266,356 + GFF3382 0.56 -1.7 266,356 + GFF3382 0.56 +0.3 266,567 - GFF3382 0.63 +0.9 266,567 - GFF3382 0.63 +0.6 266,567 - GFF3382 0.63 +0.3 266,677 + GFF3382 0.67 -1.5 266,677 + GFF3382 0.67 -0.5 266,678 - GFF3382 0.67 -0.7 266,714 - GFF3382 0.69 -1.5 266,792 - GFF3382 0.71 +0.7 266,812 + GFF3382 0.72 +1.8 266,812 + GFF3382 0.72 +0.1 266,812 + GFF3382 0.72 +1.3 266,812 + GFF3382 0.72 -0.5 266,812 + GFF3382 0.72 -0.2 266,812 + GFF3382 0.72 -0.2 266,812 + GFF3382 0.72 +0.7 266,812 + GFF3382 0.72 +0.8 266,813 - GFF3382 0.72 -2.2 266,813 - GFF3382 0.72 +1.3 266,813 - GFF3382 0.72 -0.5 267,022 + GFF3382 0.79 +0.6 267,145 + GFF3382 0.84 -0.6 267,146 - GFF3382 0.84 +0.0 267,146 - GFF3382 0.84 +0.1 267,146 - GFF3382 0.84 +0.0 267,146 - GFF3382 0.84 +0.5 267,146 - GFF3382 0.84 +0.3 267,205 + GFF3382 0.86 -0.4 267,251 - GFF3382 0.87 +1.0 267,559 + +1.1 267,559 + -0.2 267,559 + +1.3 267,559 + +0.5 267,559 + +2.3 267,560 - -0.8 267,560 - +0.6 267,560 - +0.3 267,586 + +0.3 267,586 + +1.1 267,587 - -1.0 267,689 + +0.0 267,690 - -0.0 267,690 - +0.8 267,690 - +0.3 267,690 - -0.2 268,023 - GFF3383 0.37 +0.4 268,294 - GFF3383 0.67 -0.4 268,585 - +0.3 268,587 - -0.0 268,587 - +0.3
Or see this region's nucleotide sequence