Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3312 and GFF3313 are separated by 5 nucleotides GFF3313 and GFF3314 are separated by 128 nucleotides
GFF3312 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 198,402 to 199,688
GFF3312
GFF3313 - putative exported protein, at 199,694 to 200,683
GFF3313
GFF3314 - Transcriptional regulator, at 200,812 to 201,705
GFF3314
Position (kb) 199
200
201 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 198.767 kb on - strand, within GFF3312 at 198.767 kb on - strand, within GFF3312 at 198.866 kb on - strand, within GFF3312 at 198.904 kb on + strand, within GFF3312 at 198.904 kb on + strand, within GFF3312 at 198.905 kb on - strand, within GFF3312 at 199.160 kb on - strand, within GFF3312 at 199.199 kb on - strand, within GFF3312 at 199.523 kb on - strand, within GFF3312 at 199.523 kb on - strand, within GFF3312 at 199.579 kb on + strand at 199.758 kb on + strand at 199.758 kb on + strand at 199.758 kb on + strand at 199.758 kb on + strand at 199.759 kb on - strand at 199.759 kb on - strand at 199.759 kb on - strand at 199.759 kb on - strand at 199.759 kb on - strand at 199.813 kb on - strand, within GFF3313 at 200.097 kb on + strand, within GFF3313 at 200.097 kb on + strand, within GFF3313 at 200.097 kb on + strand, within GFF3313 at 200.097 kb on + strand, within GFF3313 at 200.098 kb on - strand, within GFF3313 at 200.098 kb on - strand, within GFF3313 at 200.205 kb on + strand, within GFF3313 at 200.291 kb on + strand, within GFF3313 at 200.295 kb on + strand, within GFF3313 at 200.295 kb on + strand, within GFF3313 at 200.296 kb on - strand, within GFF3313 at 200.296 kb on - strand, within GFF3313 at 200.343 kb on + strand, within GFF3313 at 200.344 kb on - strand, within GFF3313 at 200.918 kb on + strand, within GFF3314 at 200.919 kb on - strand, within GFF3314 at 201.004 kb on + strand, within GFF3314 at 201.004 kb on + strand, within GFF3314 at 201.004 kb on + strand, within GFF3314 at 201.005 kb on - strand, within GFF3314 at 201.196 kb on + strand, within GFF3314 at 201.196 kb on + strand, within GFF3314 at 201.197 kb on - strand, within GFF3314 at 201.388 kb on + strand, within GFF3314
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 198,767 - GFF3312 0.28 +0.3 198,767 - GFF3312 0.28 -0.7 198,866 - GFF3312 0.36 -0.7 198,904 + GFF3312 0.39 -0.2 198,904 + GFF3312 0.39 -0.5 198,905 - GFF3312 0.39 -0.3 199,160 - GFF3312 0.59 +0.0 199,199 - GFF3312 0.62 -0.9 199,523 - GFF3312 0.87 -0.2 199,523 - GFF3312 0.87 -1.0 199,579 + +0.8 199,758 + -0.2 199,758 + -0.2 199,758 + +0.6 199,758 + +0.6 199,759 - +0.1 199,759 - +0.3 199,759 - -0.8 199,759 - +0.9 199,759 - +0.2 199,813 - GFF3313 0.12 +1.3 200,097 + GFF3313 0.41 -0.1 200,097 + GFF3313 0.41 +0.3 200,097 + GFF3313 0.41 +0.9 200,097 + GFF3313 0.41 -0.4 200,098 - GFF3313 0.41 +0.7 200,098 - GFF3313 0.41 -0.8 200,205 + GFF3313 0.52 +0.1 200,291 + GFF3313 0.60 -1.1 200,295 + GFF3313 0.61 +7.0 200,295 + GFF3313 0.61 +0.7 200,296 - GFF3313 0.61 -0.8 200,296 - GFF3313 0.61 +0.3 200,343 + GFF3313 0.66 -0.3 200,344 - GFF3313 0.66 -0.5 200,918 + GFF3314 0.12 -0.3 200,919 - GFF3314 0.12 -0.2 201,004 + GFF3314 0.21 -1.2 201,004 + GFF3314 0.21 +0.3 201,004 + GFF3314 0.21 -0.3 201,005 - GFF3314 0.22 +0.1 201,196 + GFF3314 0.43 +0.8 201,196 + GFF3314 0.43 -0.2 201,197 - GFF3314 0.43 +0.6 201,388 + GFF3314 0.64 +0.2
Or see this region's nucleotide sequence