Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3286

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3284 and GFF3285 are separated by 33 nucleotidesGFF3285 and GFF3286 are separated by 32 nucleotidesGFF3286 and GFF3287 overlap by 4 nucleotidesGFF3287 and GFF3288 overlap by 8 nucleotides GFF3284 - 2,4'-dihydroxyacetophenone dioxygenase, at 170,414 to 170,947 GFF3284 GFF3285 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 170,981 to 171,751 GFF3285 GFF3286 - blr4981; probable amidase, at 171,784 to 172,773 GFF3286 GFF3287 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 172,770 to 173,501 GFF3287 GFF3288 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 173,494 to 174,210 GFF3288 Position (kb) 171 172 173Strain fitness (log2 ratio) -1 0 1at 170.826 kb on + strand, within GFF3284at 170.826 kb on + strand, within GFF3284at 170.827 kb on - strand, within GFF3284at 170.827 kb on - strand, within GFF3284at 170.862 kb on + strand, within GFF3284at 170.863 kb on - strand, within GFF3284at 170.863 kb on - strand, within GFF3284

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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170,826 + GFF3284 0.77 -0.1
170,826 + GFF3284 0.77 -0.7
170,827 - GFF3284 0.77 +0.2
170,827 - GFF3284 0.77 +0.6
170,862 + GFF3284 0.84 -0.2
170,863 - GFF3284 0.84 +0.7
170,863 - GFF3284 0.84 +0.1

Or see this region's nucleotide sequence