Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3103 and GFF3104 are separated by 94 nucleotides GFF3104 and GFF3105 are separated by 172 nucleotides GFF3105 and GFF3106 are separated by 60 nucleotides
GFF3103 - Extracellular ligand-binding receptor precursor, at 180,237 to 181,370
GFF3103
GFF3104 - FIG026291: Hypothetical periplasmic protein, at 181,465 to 182,040
GFF3104
GFF3105 - hypothetical protein, at 182,213 to 182,407
GFF3105
GFF3106 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 182,468 to 183,967
GFF3106
Position (kb) 181
182
183 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 180.607 kb on + strand, within GFF3103 at 180.607 kb on + strand, within GFF3103 at 180.607 kb on + strand, within GFF3103 at 180.608 kb on - strand, within GFF3103 at 181.132 kb on + strand, within GFF3103 at 181.132 kb on + strand, within GFF3103 at 181.132 kb on + strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.133 kb on - strand, within GFF3103 at 181.547 kb on + strand, within GFF3104 at 181.547 kb on + strand, within GFF3104 at 181.547 kb on + strand, within GFF3104 at 181.547 kb on + strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.548 kb on - strand, within GFF3104 at 181.862 kb on + strand, within GFF3104 at 181.862 kb on + strand, within GFF3104 at 181.862 kb on + strand, within GFF3104 at 181.862 kb on + strand, within GFF3104 at 181.863 kb on - strand, within GFF3104 at 181.878 kb on - strand, within GFF3104 at 181.878 kb on - strand, within GFF3104 at 181.898 kb on + strand, within GFF3104 at 182.164 kb on + strand at 182.215 kb on - strand at 182.310 kb on + strand, within GFF3105 at 182.310 kb on + strand, within GFF3105 at 182.310 kb on + strand, within GFF3105 at 182.311 kb on - strand, within GFF3105 at 182.510 kb on + strand at 182.510 kb on + strand at 182.510 kb on + strand at 182.510 kb on + strand at 182.510 kb on + strand at 182.511 kb on - strand at 182.511 kb on - strand at 182.511 kb on - strand at 182.511 kb on - strand at 182.570 kb on + strand at 182.571 kb on - strand at 182.654 kb on + strand, within GFF3106 at 182.855 kb on + strand, within GFF3106 at 182.856 kb on - strand, within GFF3106 at 182.856 kb on - strand, within GFF3106 at 182.993 kb on + strand, within GFF3106 at 182.993 kb on + strand, within GFF3106 at 182.993 kb on + strand, within GFF3106 at 182.993 kb on + strand, within GFF3106 at 182.993 kb on + strand, within GFF3106 at 182.994 kb on - strand, within GFF3106 at 182.994 kb on - strand, within GFF3106 at 182.994 kb on - strand, within GFF3106 at 182.994 kb on - strand, within GFF3106 at 182.994 kb on - strand, within GFF3106 at 183.005 kb on + strand, within GFF3106 at 183.005 kb on + strand, within GFF3106 at 183.006 kb on - strand, within GFF3106 at 183.032 kb on + strand, within GFF3106 at 183.032 kb on + strand, within GFF3106 at 183.032 kb on + strand, within GFF3106 at 183.032 kb on + strand, within GFF3106 at 183.032 kb on + strand, within GFF3106 at 183.033 kb on - strand, within GFF3106 at 183.033 kb on - strand, within GFF3106 at 183.033 kb on - strand, within GFF3106
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 180,607 + GFF3103 0.33 -0.6 180,607 + GFF3103 0.33 -0.6 180,607 + GFF3103 0.33 -0.2 180,608 - GFF3103 0.33 +0.3 181,132 + GFF3103 0.79 -0.4 181,132 + GFF3103 0.79 -0.2 181,132 + GFF3103 0.79 +0.7 181,133 - GFF3103 0.79 -0.2 181,133 - GFF3103 0.79 -0.5 181,133 - GFF3103 0.79 -0.0 181,133 - GFF3103 0.79 -0.1 181,133 - GFF3103 0.79 -0.5 181,133 - GFF3103 0.79 +0.1 181,133 - GFF3103 0.79 -0.6 181,133 - GFF3103 0.79 +0.3 181,133 - GFF3103 0.79 +0.2 181,133 - GFF3103 0.79 +0.9 181,547 + GFF3104 0.14 +0.0 181,547 + GFF3104 0.14 +0.5 181,547 + GFF3104 0.14 +1.2 181,547 + GFF3104 0.14 +0.2 181,548 - GFF3104 0.14 -1.7 181,548 - GFF3104 0.14 -1.5 181,548 - GFF3104 0.14 -0.5 181,548 - GFF3104 0.14 -1.1 181,548 - GFF3104 0.14 +1.3 181,862 + GFF3104 0.69 -0.9 181,862 + GFF3104 0.69 +0.2 181,862 + GFF3104 0.69 +1.7 181,862 + GFF3104 0.69 +0.4 181,863 - GFF3104 0.69 -0.2 181,878 - GFF3104 0.72 -0.2 181,878 - GFF3104 0.72 +0.9 181,898 + GFF3104 0.75 -0.6 182,164 + -0.8 182,215 - +0.3 182,310 + GFF3105 0.50 +0.3 182,310 + GFF3105 0.50 -0.7 182,310 + GFF3105 0.50 -0.9 182,311 - GFF3105 0.50 -0.2 182,510 + -0.7 182,510 + -5.1 182,510 + -5.8 182,510 + -4.0 182,510 + -3.6 182,511 - -4.8 182,511 - -3.0 182,511 - -1.2 182,511 - -2.1 182,570 + -1.2 182,571 - -2.6 182,654 + GFF3106 0.12 -3.0 182,855 + GFF3106 0.26 -1.7 182,856 - GFF3106 0.26 -3.7 182,856 - GFF3106 0.26 -1.8 182,993 + GFF3106 0.35 -5.6 182,993 + GFF3106 0.35 -2.7 182,993 + GFF3106 0.35 -2.9 182,993 + GFF3106 0.35 -4.0 182,993 + GFF3106 0.35 -3.7 182,994 - GFF3106 0.35 -5.2 182,994 - GFF3106 0.35 -2.7 182,994 - GFF3106 0.35 -2.1 182,994 - GFF3106 0.35 -0.2 182,994 - GFF3106 0.35 -2.2 183,005 + GFF3106 0.36 -4.8 183,005 + GFF3106 0.36 -1.0 183,006 - GFF3106 0.36 -4.4 183,032 + GFF3106 0.38 -1.7 183,032 + GFF3106 0.38 -1.8 183,032 + GFF3106 0.38 -2.5 183,032 + GFF3106 0.38 -3.4 183,032 + GFF3106 0.38 -2.1 183,033 - GFF3106 0.38 -1.0 183,033 - GFF3106 0.38 -3.4 183,033 - GFF3106 0.38 -2.7
Or see this region's nucleotide sequence