Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3094 and GFF3095 are separated by 41 nucleotides GFF3095 and GFF3096 are separated by 75 nucleotides GFF3096 and GFF3097 are separated by 22 nucleotides
GFF3094 - Site-specific recombinase, at 170,971 to 173,013
GFF3094
GFF3095 - ApaG protein, at 173,055 to 173,459
GFF3095
GFF3096 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 173,535 to 174,218
GFF3096
GFF3097 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 174,241 to 175,071
GFF3097
Position (kb) 173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.286 kb on + strand, within GFF3094 at 172.287 kb on - strand, within GFF3094 at 172.287 kb on - strand, within GFF3094 at 172.296 kb on - strand, within GFF3094 at 172.509 kb on - strand, within GFF3094 at 172.739 kb on + strand, within GFF3094 at 173.209 kb on + strand, within GFF3095 at 173.209 kb on + strand, within GFF3095 at 173.209 kb on + strand, within GFF3095 at 173.209 kb on + strand, within GFF3095 at 173.209 kb on + strand, within GFF3095 at 173.209 kb on + strand, within GFF3095 at 173.210 kb on - strand, within GFF3095 at 173.210 kb on - strand, within GFF3095 at 173.210 kb on - strand, within GFF3095 at 173.362 kb on + strand, within GFF3095 at 173.363 kb on - strand, within GFF3095 at 173.363 kb on - strand, within GFF3095 at 173.374 kb on + strand, within GFF3095 at 173.374 kb on + strand, within GFF3095 at 173.374 kb on + strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.375 kb on - strand, within GFF3095 at 173.440 kb on + strand at 173.440 kb on + strand at 173.440 kb on + strand at 173.440 kb on + strand at 173.440 kb on + strand at 173.441 kb on - strand at 173.441 kb on - strand at 173.441 kb on - strand at 173.462 kb on + strand at 173.462 kb on + strand at 173.463 kb on - strand at 174.374 kb on + strand, within GFF3097 at 174.375 kb on - strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.398 kb on + strand, within GFF3097 at 174.399 kb on - strand, within GFF3097 at 174.399 kb on - strand, within GFF3097
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 172,286 + GFF3094 0.64 -0.4 172,287 - GFF3094 0.64 -2.4 172,287 - GFF3094 0.64 -0.5 172,296 - GFF3094 0.65 -0.0 172,509 - GFF3094 0.75 +0.1 172,739 + GFF3094 0.87 -1.5 173,209 + GFF3095 0.38 +0.2 173,209 + GFF3095 0.38 +0.3 173,209 + GFF3095 0.38 -0.5 173,209 + GFF3095 0.38 +1.3 173,209 + GFF3095 0.38 +0.2 173,209 + GFF3095 0.38 +1.8 173,210 - GFF3095 0.38 +0.6 173,210 - GFF3095 0.38 +0.2 173,210 - GFF3095 0.38 +0.2 173,362 + GFF3095 0.76 +0.9 173,363 - GFF3095 0.76 +0.9 173,363 - GFF3095 0.76 -1.1 173,374 + GFF3095 0.79 +0.5 173,374 + GFF3095 0.79 -0.4 173,374 + GFF3095 0.79 -0.8 173,375 - GFF3095 0.79 +0.1 173,375 - GFF3095 0.79 +0.0 173,375 - GFF3095 0.79 +0.3 173,375 - GFF3095 0.79 -2.0 173,375 - GFF3095 0.79 +0.5 173,440 + +0.6 173,440 + +0.0 173,440 + -0.5 173,440 + +0.8 173,440 + -0.3 173,441 - -0.5 173,441 - -0.4 173,441 - +0.3 173,462 + +1.9 173,462 + +0.2 173,463 - -0.5 174,374 + GFF3097 0.16 -0.7 174,375 - GFF3097 0.16 +0.1 174,398 + GFF3097 0.19 +0.9 174,398 + GFF3097 0.19 -0.8 174,398 + GFF3097 0.19 +1.1 174,399 - GFF3097 0.19 -0.3 174,399 - GFF3097 0.19 -0.3
Or see this region's nucleotide sequence