Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3064 and GFF3065 are separated by 73 nucleotides GFF3065 and GFF3066 are separated by 271 nucleotides GFF3066 and GFF3067 overlap by 4 nucleotides GFF3067 and GFF3068 are separated by 4 nucleotides
GFF3064 - Probable cell division ftsn transmembrane protein, at 144,429 to 145,139
GFF3064
GFF3065 - Periplasmic thiol:disulfide interchange protein DsbA, at 145,213 to 145,863
GFF3065
GFF3066 - LptA, protein essential for LPS transport across the periplasm, at 146,135 to 146,608
GFF3066
GFF3067 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 146,605 to 147,402
GFF3067
GFF3068 - RNA polymerase sigma-54 factor RpoN, at 147,407 to 149,035
GFF3068
Position (kb) 146
147 Strain fitness (log2 ratio) -2
-1
0
1 at 145.408 kb on + strand, within GFF3065 at 145.408 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.474 kb on + strand, within GFF3065 at 145.475 kb on - strand, within GFF3065 at 145.475 kb on - strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.537 kb on + strand, within GFF3065 at 145.538 kb on - strand, within GFF3065 at 145.747 kb on + strand, within GFF3065 at 145.747 kb on + strand, within GFF3065 at 145.747 kb on + strand, within GFF3065 at 145.748 kb on - strand, within GFF3065 at 145.789 kb on + strand, within GFF3065 at 145.790 kb on - strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.792 kb on + strand, within GFF3065 at 145.793 kb on - strand, within GFF3065 at 145.793 kb on - strand, within GFF3065 at 145.793 kb on - strand, within GFF3065 at 145.793 kb on - strand, within GFF3065
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 145,408 + GFF3065 0.30 +0.1 145,408 + GFF3065 0.30 +0.8 145,474 + GFF3065 0.40 +1.3 145,474 + GFF3065 0.40 -0.2 145,474 + GFF3065 0.40 +0.2 145,474 + GFF3065 0.40 -1.0 145,474 + GFF3065 0.40 -1.5 145,474 + GFF3065 0.40 +1.2 145,474 + GFF3065 0.40 -2.0 145,475 - GFF3065 0.40 +0.2 145,475 - GFF3065 0.40 -1.7 145,537 + GFF3065 0.50 +0.6 145,537 + GFF3065 0.50 +0.3 145,537 + GFF3065 0.50 -1.5 145,537 + GFF3065 0.50 -0.2 145,537 + GFF3065 0.50 +0.1 145,537 + GFF3065 0.50 -0.2 145,538 - GFF3065 0.50 -0.4 145,747 + GFF3065 0.82 +0.3 145,747 + GFF3065 0.82 +0.0 145,747 + GFF3065 0.82 -0.0 145,748 - GFF3065 0.82 +0.4 145,789 + GFF3065 0.88 +0.8 145,790 - GFF3065 0.89 +1.1 145,792 + GFF3065 0.89 -0.1 145,792 + GFF3065 0.89 +0.5 145,792 + GFF3065 0.89 +1.2 145,792 + GFF3065 0.89 +0.1 145,792 + GFF3065 0.89 -0.2 145,792 + GFF3065 0.89 +0.6 145,793 - GFF3065 0.89 +0.2 145,793 - GFF3065 0.89 +0.6 145,793 - GFF3065 0.89 -0.4 145,793 - GFF3065 0.89 +1.3
Or see this region's nucleotide sequence