Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF283 and GFF284 are separated by 46 nucleotides GFF284 and GFF285 are separated by 33 nucleotides GFF285 and GFF286 are separated by 106 nucleotides GFF286 and GFF287 are separated by 66 nucleotides
GFF283 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 298,946 to 299,902
GFF283
GFF284 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 299,949 to 300,698
GFF284
GFF285 - 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 300,732 to 302,186
GFF285
GFF286 - Outer membrane lipoprotein omp16 precursor, at 302,293 to 303,024
GFF286
GFF287 - Oxidoreductase, at 303,091 to 304,134
GFF287
Position (kb) 300
301
302
303 Strain fitness (log2 ratio) -2
-1
0
1 at 299.858 kb on + strand at 299.988 kb on + strand at 300.015 kb on + strand at 300.015 kb on + strand at 300.016 kb on - strand at 300.016 kb on - strand at 300.657 kb on + strand at 300.657 kb on + strand at 300.657 kb on + strand at 300.657 kb on + strand at 300.658 kb on - strand at 300.658 kb on - strand at 300.873 kb on + strand at 300.874 kb on - strand at 301.038 kb on + strand, within GFF285 at 301.039 kb on - strand, within GFF285 at 301.137 kb on + strand, within GFF285 at 301.137 kb on + strand, within GFF285 at 301.578 kb on + strand, within GFF285 at 301.581 kb on + strand, within GFF285 at 301.621 kb on - strand, within GFF285 at 301.638 kb on + strand, within GFF285 at 301.639 kb on - strand, within GFF285 at 301.639 kb on - strand, within GFF285 at 301.816 kb on + strand, within GFF285 at 301.839 kb on + strand, within GFF285 at 302.041 kb on - strand at 302.151 kb on + strand at 302.151 kb on + strand at 302.151 kb on + strand at 302.152 kb on - strand at 302.152 kb on - strand at 302.327 kb on + strand at 303.033 kb on + strand at 303.033 kb on + strand at 303.033 kb on + strand at 303.034 kb on - strand at 303.034 kb on - strand at 303.035 kb on + strand at 303.074 kb on + strand at 303.074 kb on + strand at 303.075 kb on - strand at 303.075 kb on - strand at 303.078 kb on + strand at 303.079 kb on - strand at 303.079 kb on - strand at 303.084 kb on + strand at 303.084 kb on + strand at 303.084 kb on + strand at 303.085 kb on - strand at 303.085 kb on - strand at 303.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 299,858 + +0.4 299,988 + -0.5 300,015 + -0.4 300,015 + -0.4 300,016 - +0.5 300,016 - +0.0 300,657 + -0.3 300,657 + -0.5 300,657 + +0.2 300,657 + +0.4 300,658 - -0.0 300,658 - +1.4 300,873 + +0.3 300,874 - +1.4 301,038 + GFF285 0.21 -0.2 301,039 - GFF285 0.21 -0.4 301,137 + GFF285 0.28 -0.3 301,137 + GFF285 0.28 -0.8 301,578 + GFF285 0.58 -0.1 301,581 + GFF285 0.58 -0.7 301,621 - GFF285 0.61 +0.1 301,638 + GFF285 0.62 -0.6 301,639 - GFF285 0.62 +0.0 301,639 - GFF285 0.62 +0.8 301,816 + GFF285 0.75 -0.8 301,839 + GFF285 0.76 +0.6 302,041 - +0.6 302,151 + -0.3 302,151 + -0.4 302,151 + -1.8 302,152 - +0.1 302,152 - +0.7 302,327 + +0.5 303,033 + +0.1 303,033 + +0.6 303,033 + -0.3 303,034 - +0.1 303,034 - +0.1 303,035 + -0.8 303,074 + +1.0 303,074 + +0.3 303,075 - +0.0 303,075 - -0.7 303,078 + -0.6 303,079 - -0.3 303,079 - +0.3 303,084 + +0.0 303,084 + -0.5 303,084 + -0.3 303,085 - -0.5 303,085 - +0.2 303,085 - +0.1
Or see this region's nucleotide sequence