Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2844

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2842 and GFF2843 are separated by 14 nucleotidesGFF2843 and GFF2844 are separated by 121 nucleotidesGFF2844 and GFF2845 are separated by 6 nucleotidesGFF2845 and GFF2846 are separated by 66 nucleotides GFF2842 - Enoyl-CoA hydratase (EC 4.2.1.17), at 433,911 to 434,726 GFF2842 GFF2843 - FIG00455451: hypothetical protein, at 434,741 to 435,178 GFF2843 GFF2844 - LysR family transcriptional regulator PA2758, at 435,300 to 436,199 GFF2844 GFF2845 - hypothetical protein, at 436,206 to 436,409 GFF2845 GFF2846 - Transcriptional regulator, AraC family, at 436,476 to 437,441 GFF2846 Position (kb) 435 436 437Strain fitness (log2 ratio) -1 0 1 2 3at 434.326 kb on - strand, within GFF2842at 434.326 kb on - strand, within GFF2842at 434.338 kb on - strand, within GFF2842at 434.592 kb on + strand, within GFF2842at 434.593 kb on - strand, within GFF2842at 434.593 kb on - strand, within GFF2842at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.820 kb on + strand, within GFF2843at 434.821 kb on - strand, within GFF2843at 434.821 kb on - strand, within GFF2843at 434.821 kb on - strand, within GFF2843at 434.821 kb on - strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.015 kb on + strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.016 kb on - strand, within GFF2843at 435.138 kb on + strandat 435.138 kb on + strandat 435.138 kb on + strandat 435.139 kb on - strandat 435.139 kb on - strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.150 kb on + strandat 435.151 kb on - strandat 435.151 kb on - strandat 435.238 kb on + strandat 435.238 kb on + strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 435.239 kb on - strandat 436.011 kb on + strand, within GFF2844at 436.011 kb on + strand, within GFF2844at 436.403 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.443 kb on + strandat 436.444 kb on - strandat 436.511 kb on - strandat 436.511 kb on - strandat 436.529 kb on + strandat 436.531 kb on + strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.532 kb on - strandat 436.648 kb on + strand, within GFF2846at 436.649 kb on - strand, within GFF2846at 436.649 kb on - strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.188 kb on + strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.189 kb on - strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.194 kb on + strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.195 kb on - strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.197 kb on + strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846at 437.198 kb on - strand, within GFF2846

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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434,326 - GFF2842 0.51 -1.6
434,326 - GFF2842 0.51 +0.2
434,338 - GFF2842 0.52 -1.7
434,592 + GFF2842 0.83 -0.6
434,593 - GFF2842 0.84 -0.2
434,593 - GFF2842 0.84 -0.2
434,820 + GFF2843 0.18 +0.3
434,820 + GFF2843 0.18 +0.1
434,820 + GFF2843 0.18 -1.2
434,820 + GFF2843 0.18 +0.2
434,820 + GFF2843 0.18 -0.2
434,820 + GFF2843 0.18 -0.6
434,821 - GFF2843 0.18 +0.6
434,821 - GFF2843 0.18 -0.1
434,821 - GFF2843 0.18 +0.7
434,821 - GFF2843 0.18 -0.0
435,015 + GFF2843 0.63 +0.5
435,015 + GFF2843 0.63 +0.9
435,015 + GFF2843 0.63 +1.3
435,015 + GFF2843 0.63 +0.9
435,015 + GFF2843 0.63 +0.9
435,015 + GFF2843 0.63 +0.3
435,015 + GFF2843 0.63 -0.0
435,015 + GFF2843 0.63 -0.9
435,016 - GFF2843 0.63 +0.5
435,016 - GFF2843 0.63 -0.8
435,016 - GFF2843 0.63 -0.7
435,016 - GFF2843 0.63 -0.2
435,016 - GFF2843 0.63 -0.7
435,016 - GFF2843 0.63 +0.1
435,138 + +0.3
435,138 + -0.0
435,138 + +0.1
435,139 - +0.3
435,139 - +0.2
435,150 + -0.3
435,150 + +0.0
435,150 + +0.5
435,150 + -0.0
435,150 + +0.3
435,150 + -0.4
435,150 + -0.2
435,150 + -0.2
435,150 + +0.1
435,151 - -0.4
435,151 - +0.1
435,238 + -0.4
435,238 + +0.0
435,239 - -0.1
435,239 - +0.0
435,239 - -0.2
435,239 - -0.9
435,239 - +0.3
435,239 - -0.9
436,011 + GFF2844 0.79 +0.3
436,011 + GFF2844 0.79 -1.4
436,403 + +0.8
436,443 + +0.6
436,443 + +0.1
436,443 + +0.3
436,443 + +0.4
436,443 + -0.7
436,444 - +0.8
436,511 - -0.2
436,511 - +0.8
436,529 + -0.1
436,531 + +0.1
436,532 - +0.4
436,532 - -0.9
436,532 - +0.5
436,532 - -0.5
436,648 + GFF2846 0.18 +0.9
436,649 - GFF2846 0.18 +0.1
436,649 - GFF2846 0.18 -0.1
437,188 + GFF2846 0.74 -0.2
437,188 + GFF2846 0.74 +0.4
437,188 + GFF2846 0.74 +0.4
437,188 + GFF2846 0.74 +0.0
437,188 + GFF2846 0.74 +1.3
437,189 - GFF2846 0.74 -0.8
437,189 - GFF2846 0.74 +0.2
437,189 - GFF2846 0.74 -0.0
437,189 - GFF2846 0.74 +0.1
437,189 - GFF2846 0.74 -0.5
437,189 - GFF2846 0.74 +0.6
437,194 + GFF2846 0.74 +0.5
437,194 + GFF2846 0.74 -0.3
437,194 + GFF2846 0.74 +0.9
437,194 + GFF2846 0.74 +0.1
437,194 + GFF2846 0.74 -0.0
437,194 + GFF2846 0.74 +0.5
437,194 + GFF2846 0.74 -0.7
437,194 + GFF2846 0.74 -0.5
437,194 + GFF2846 0.74 -0.0
437,194 + GFF2846 0.74 +0.8
437,195 - GFF2846 0.74 +0.2
437,195 - GFF2846 0.74 -1.4
437,195 - GFF2846 0.74 +2.9
437,195 - GFF2846 0.74 +0.8
437,195 - GFF2846 0.74 +0.0
437,195 - GFF2846 0.74 -0.5
437,195 - GFF2846 0.74 -0.7
437,195 - GFF2846 0.74 -0.1
437,195 - GFF2846 0.74 -1.2
437,195 - GFF2846 0.74 -0.7
437,195 - GFF2846 0.74 -1.2
437,195 - GFF2846 0.74 +0.0
437,195 - GFF2846 0.74 -0.4
437,195 - GFF2846 0.74 -1.2
437,197 + GFF2846 0.75 -0.3
437,197 + GFF2846 0.75 -0.1
437,197 + GFF2846 0.75 -0.2
437,197 + GFF2846 0.75 -0.5
437,197 + GFF2846 0.75 +0.3
437,197 + GFF2846 0.75 +0.5
437,197 + GFF2846 0.75 -0.7
437,197 + GFF2846 0.75 +0.2
437,198 - GFF2846 0.75 +0.1
437,198 - GFF2846 0.75 +0.1
437,198 - GFF2846 0.75 +0.3
437,198 - GFF2846 0.75 +0.6
437,198 - GFF2846 0.75 -0.0
437,198 - GFF2846 0.75 +0.7
437,198 - GFF2846 0.75 +0.1
437,198 - GFF2846 0.75 +0.2

Or see this region's nucleotide sequence