Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2798 and GFF2799 are separated by 188 nucleotides GFF2799 and GFF2800 are separated by 13 nucleotides
GFF2798 - tRNA-guanine transglycosylase (EC 2.4.2.29), at 395,135 to 396,301
GFF2798
GFF2799 - Predicted thiazole transporter ThiU, at 396,490 to 397,758
GFF2799
GFF2800 - L-sorbosone dehydrogenase, at 397,772 to 398,983
GFF2800
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 395.559 kb on + strand, within GFF2798 at 395.560 kb on - strand, within GFF2798 at 395.856 kb on + strand, within GFF2798 at 395.857 kb on - strand, within GFF2798 at 395.857 kb on - strand, within GFF2798 at 396.042 kb on - strand, within GFF2798 at 396.195 kb on + strand at 396.195 kb on + strand at 396.196 kb on - strand at 396.196 kb on - strand at 396.196 kb on - strand at 396.335 kb on + strand at 396.336 kb on - strand at 396.336 kb on - strand at 396.337 kb on + strand at 396.356 kb on - strand at 396.511 kb on + strand at 396.511 kb on + strand at 396.511 kb on + strand at 396.512 kb on - strand at 396.512 kb on - strand at 396.512 kb on - strand at 396.512 kb on - strand at 396.517 kb on + strand at 396.517 kb on + strand at 396.518 kb on - strand at 396.518 kb on - strand at 396.520 kb on + strand at 396.520 kb on + strand at 396.520 kb on + strand at 396.520 kb on + strand at 396.520 kb on + strand at 396.520 kb on + strand at 396.520 kb on + strand at 396.521 kb on - strand at 396.521 kb on - strand at 396.521 kb on - strand at 396.521 kb on - strand at 396.521 kb on - strand at 396.526 kb on + strand at 396.526 kb on + strand at 396.526 kb on + strand at 396.526 kb on + strand at 396.526 kb on + strand at 396.527 kb on - strand at 396.527 kb on - strand at 396.754 kb on + strand, within GFF2799 at 396.754 kb on + strand, within GFF2799 at 396.755 kb on - strand, within GFF2799 at 397.045 kb on + strand, within GFF2799 at 397.045 kb on + strand, within GFF2799 at 397.045 kb on + strand, within GFF2799 at 397.045 kb on + strand, within GFF2799 at 397.046 kb on - strand, within GFF2799 at 397.046 kb on - strand, within GFF2799 at 397.186 kb on + strand, within GFF2799 at 397.186 kb on + strand, within GFF2799 at 397.186 kb on + strand, within GFF2799 at 397.186 kb on + strand, within GFF2799 at 397.187 kb on - strand, within GFF2799 at 397.187 kb on - strand, within GFF2799 at 397.198 kb on + strand, within GFF2799 at 397.198 kb on + strand, within GFF2799 at 397.225 kb on + strand, within GFF2799 at 397.226 kb on - strand, within GFF2799 at 397.226 kb on - strand, within GFF2799 at 397.561 kb on + strand, within GFF2799 at 397.562 kb on - strand, within GFF2799 at 397.583 kb on - strand, within GFF2799 at 397.672 kb on + strand at 397.673 kb on - strand at 397.987 kb on - strand, within GFF2800 at 398.175 kb on + strand, within GFF2800 at 398.175 kb on + strand, within GFF2800 at 398.388 kb on + strand, within GFF2800 at 398.388 kb on + strand, within GFF2800 at 398.389 kb on - strand, within GFF2800 at 398.625 kb on + strand, within GFF2800 at 398.626 kb on - strand, within GFF2800
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 395,559 + GFF2798 0.36 +0.3 395,560 - GFF2798 0.36 -0.5 395,856 + GFF2798 0.62 -1.2 395,857 - GFF2798 0.62 -0.5 395,857 - GFF2798 0.62 +0.3 396,042 - GFF2798 0.78 +0.3 396,195 + -0.2 396,195 + +0.2 396,196 - -0.5 396,196 - +0.3 396,196 - +1.8 396,335 + -0.7 396,336 - -0.2 396,336 - +0.1 396,337 + -0.1 396,356 - +0.2 396,511 + +0.3 396,511 + -0.4 396,511 + +0.5 396,512 - +0.3 396,512 - +0.0 396,512 - -1.7 396,512 - -1.8 396,517 + +0.3 396,517 + +0.2 396,518 - -0.4 396,518 - +0.5 396,520 + -0.3 396,520 + +0.0 396,520 + -0.4 396,520 + +0.8 396,520 + +0.3 396,520 + +0.7 396,520 + +1.0 396,521 - +0.1 396,521 - +0.6 396,521 - -0.1 396,521 - +1.8 396,521 - -0.4 396,526 + +0.6 396,526 + -0.2 396,526 + +0.6 396,526 + -0.1 396,526 + +0.3 396,527 - -0.3 396,527 - +1.1 396,754 + GFF2799 0.21 -0.3 396,754 + GFF2799 0.21 -0.8 396,755 - GFF2799 0.21 +0.6 397,045 + GFF2799 0.44 +0.8 397,045 + GFF2799 0.44 -0.0 397,045 + GFF2799 0.44 -0.6 397,045 + GFF2799 0.44 -0.9 397,046 - GFF2799 0.44 -0.4 397,046 - GFF2799 0.44 -0.5 397,186 + GFF2799 0.55 +0.3 397,186 + GFF2799 0.55 +1.8 397,186 + GFF2799 0.55 +0.1 397,186 + GFF2799 0.55 +0.1 397,187 - GFF2799 0.55 -0.7 397,187 - GFF2799 0.55 +0.6 397,198 + GFF2799 0.56 -0.1 397,198 + GFF2799 0.56 -0.2 397,225 + GFF2799 0.58 +0.6 397,226 - GFF2799 0.58 +0.5 397,226 - GFF2799 0.58 +0.3 397,561 + GFF2799 0.84 -0.0 397,562 - GFF2799 0.84 -1.3 397,583 - GFF2799 0.86 -0.2 397,672 + +0.5 397,673 - -0.4 397,987 - GFF2800 0.18 +1.3 398,175 + GFF2800 0.33 -0.4 398,175 + GFF2800 0.33 -0.2 398,388 + GFF2800 0.51 +1.6 398,388 + GFF2800 0.51 +0.9 398,389 - GFF2800 0.51 -0.1 398,625 + GFF2800 0.70 -0.8 398,626 - GFF2800 0.70 +0.2
Or see this region's nucleotide sequence