Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF234 and GFF235 are separated by 43 nucleotides GFF235 and GFF236 are separated by 44 nucleotides GFF236 and GFF237 overlap by 4 nucleotides
GFF234 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 255,035 to 256,204
GFF234
GFF235 - Putative RNA polymerase sigma factor, at 256,248 to 257,153
GFF235
GFF236 - Alkylhydroperoxidase AhpD core, at 257,198 to 257,656
GFF236
GFF237 - Putative secreted protein, at 257,653 to 258,393
GFF237
Position (kb) 256
257
258 Strain fitness (log2 ratio) -1
0
1
2 at 255.410 kb on + strand, within GFF234 at 255.410 kb on + strand, within GFF234 at 255.581 kb on + strand, within GFF234 at 255.707 kb on + strand, within GFF234 at 255.708 kb on - strand, within GFF234 at 255.719 kb on + strand, within GFF234 at 255.720 kb on - strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.882 kb on - strand, within GFF234 at 255.882 kb on - strand, within GFF234 at 255.882 kb on - strand, within GFF234 at 255.882 kb on - strand, within GFF234 at 256.202 kb on + strand at 256.202 kb on + strand at 256.203 kb on - strand at 256.203 kb on - strand at 256.240 kb on - strand at 256.240 kb on - strand at 256.305 kb on + strand at 256.477 kb on - strand, within GFF235 at 256.477 kb on - strand, within GFF235 at 257.244 kb on - strand, within GFF236 at 257.441 kb on + strand, within GFF236 at 257.441 kb on + strand, within GFF236 at 257.442 kb on - strand, within GFF236 at 258.025 kb on + strand, within GFF237 at 258.026 kb on - strand, within GFF237 at 258.026 kb on - strand, within GFF237 at 258.026 kb on - strand, within GFF237
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 255,410 + GFF234 0.32 +0.7 255,410 + GFF234 0.32 +0.3 255,581 + GFF234 0.47 +0.2 255,707 + GFF234 0.57 -1.6 255,708 - GFF234 0.58 -0.6 255,719 + GFF234 0.58 +0.2 255,720 - GFF234 0.59 -0.2 255,881 + GFF234 0.72 +0.4 255,881 + GFF234 0.72 +1.0 255,881 + GFF234 0.72 +0.0 255,881 + GFF234 0.72 +0.8 255,881 + GFF234 0.72 -0.2 255,882 - GFF234 0.72 +0.1 255,882 - GFF234 0.72 +2.0 255,882 - GFF234 0.72 -0.1 255,882 - GFF234 0.72 -0.5 256,202 + +0.8 256,202 + +0.4 256,203 - +0.2 256,203 - +0.4 256,240 - +0.2 256,240 - +1.1 256,305 + +0.4 256,477 - GFF235 0.25 -1.5 256,477 - GFF235 0.25 -0.8 257,244 - GFF236 0.10 -0.4 257,441 + GFF236 0.53 +0.1 257,441 + GFF236 0.53 -0.2 257,442 - GFF236 0.53 +0.2 258,025 + GFF237 0.50 +1.1 258,026 - GFF237 0.50 -0.1 258,026 - GFF237 0.50 +0.5 258,026 - GFF237 0.50 +0.8
Or see this region's nucleotide sequence