Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2098 and GFF2099 are separated by 82 nucleotides GFF2099 and GFF2100 overlap by 4 nucleotides GFF2100 and GFF2101 are separated by 3 nucleotides
GFF2098 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 985,618 to 987,507
GFF2098
GFF2099 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 987,590 to 988,366
GFF2099
GFF2100 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 988,363 to 989,079
GFF2100
GFF2101 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 989,083 to 989,958
GFF2101
Position (kb) 987
988
989 Strain fitness (log2 ratio) -1
0
1 at 986.872 kb on + strand, within GFF2098 at 987.392 kb on + strand at 987.393 kb on - strand at 987.413 kb on - strand at 987.506 kb on - strand at 987.559 kb on - strand at 988.031 kb on + strand, within GFF2099 at 988.347 kb on - strand at 988.675 kb on + strand, within GFF2100 at 988.729 kb on + strand, within GFF2100 at 988.987 kb on + strand, within GFF2100 at 989.260 kb on + strand, within GFF2101
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 986,872 + GFF2098 0.66 +0.7 987,392 + +0.0 987,393 - -0.0 987,413 - -0.5 987,506 - +0.1 987,559 - -0.2 988,031 + GFF2099 0.57 +0.4 988,347 - -1.5 988,675 + GFF2100 0.44 -0.4 988,729 + GFF2100 0.51 -0.0 988,987 + GFF2100 0.87 -0.3 989,260 + GFF2101 0.20 -0.1
Or see this region's nucleotide sequence