Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2060 and GFF2061 are separated by 5 nucleotides GFF2061 and GFF2062 are separated by 18 nucleotides GFF2062 and GFF2063 are separated by 7 nucleotides GFF2063 and GFF2064 are separated by 126 nucleotides
GFF2060 - TRAP transporter solute receptor, unknown substrate 6, at 941,925 to 943,019
GFF2060
GFF2061 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6, at 943,025 to 943,567
GFF2061
GFF2062 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 943,586 to 944,980
GFF2062
GFF2063 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 944,988 to 945,668
GFF2063
GFF2064 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 945,795 to 947,168
GFF2064
Position (kb) 943
944
945 Strain fitness (log2 ratio) -1
0
1 at 942.615 kb on + strand, within GFF2060 at 942.615 kb on + strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.619 kb on - strand, within GFF2060 at 942.619 kb on - strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.624 kb on + strand, within GFF2060 at 942.759 kb on + strand, within GFF2060 at 942.759 kb on + strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.849 kb on + strand, within GFF2060 at 942.849 kb on + strand, within GFF2060 at 942.907 kb on - strand, within GFF2060 at 942.921 kb on + strand at 942.921 kb on + strand at 942.921 kb on + strand at 942.921 kb on + strand at 942.921 kb on + strand at 942.976 kb on - strand at 943.215 kb on - strand, within GFF2061 at 943.271 kb on + strand, within GFF2061 at 943.272 kb on - strand, within GFF2061 at 943.272 kb on - strand, within GFF2061 at 943.272 kb on - strand, within GFF2061 at 943.388 kb on + strand, within GFF2061 at 943.547 kb on + strand at 943.548 kb on - strand at 943.575 kb on + strand at 943.575 kb on + strand at 943.576 kb on - strand at 944.009 kb on + strand, within GFF2062 at 944.010 kb on - strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.130 kb on - strand, within GFF2062 at 944.130 kb on - strand, within GFF2062 at 944.130 kb on - strand, within GFF2062 at 944.775 kb on - strand, within GFF2062 at 944.775 kb on - strand, within GFF2062 at 944.819 kb on + strand, within GFF2062 at 944.820 kb on - strand, within GFF2062 at 944.897 kb on + strand at 944.898 kb on - strand at 944.898 kb on - strand at 944.973 kb on - strand at 944.973 kb on - strand at 944.990 kb on - strand at 945.187 kb on + strand, within GFF2063 at 945.487 kb on + strand, within GFF2063 at 945.487 kb on + strand, within GFF2063 at 945.488 kb on - strand, within GFF2063 at 945.553 kb on + strand, within GFF2063 at 945.553 kb on + strand, within GFF2063 at 945.554 kb on - strand, within GFF2063 at 945.554 kb on - strand, within GFF2063 at 945.730 kb on - strand at 945.731 kb on + strand at 945.731 kb on + strand at 945.732 kb on - strand at 945.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 942,615 + GFF2060 0.63 +0.6 942,615 + GFF2060 0.63 -0.4 942,616 - GFF2060 0.63 +0.0 942,616 - GFF2060 0.63 -0.7 942,616 - GFF2060 0.63 +0.3 942,616 - GFF2060 0.63 +0.0 942,618 + GFF2060 0.63 -0.5 942,618 + GFF2060 0.63 +0.3 942,618 + GFF2060 0.63 +0.9 942,619 - GFF2060 0.63 -1.4 942,619 - GFF2060 0.63 -0.5 942,621 + GFF2060 0.64 -0.1 942,621 + GFF2060 0.64 -0.2 942,621 + GFF2060 0.64 -1.3 942,621 + GFF2060 0.64 -0.0 942,621 + GFF2060 0.64 -0.3 942,621 + GFF2060 0.64 -0.8 942,621 + GFF2060 0.64 -0.2 942,622 - GFF2060 0.64 -0.3 942,622 - GFF2060 0.64 +0.6 942,622 - GFF2060 0.64 +0.3 942,622 - GFF2060 0.64 +0.4 942,624 + GFF2060 0.64 -0.3 942,759 + GFF2060 0.76 -0.3 942,759 + GFF2060 0.76 +0.5 942,760 - GFF2060 0.76 +0.9 942,760 - GFF2060 0.76 +0.2 942,760 - GFF2060 0.76 -1.0 942,760 - GFF2060 0.76 +0.3 942,760 - GFF2060 0.76 +1.3 942,849 + GFF2060 0.84 -0.2 942,849 + GFF2060 0.84 -0.5 942,907 - GFF2060 0.90 -0.4 942,921 + -1.0 942,921 + +0.3 942,921 + -1.3 942,921 + +1.4 942,921 + +0.0 942,976 - +0.2 943,215 - GFF2061 0.35 +0.1 943,271 + GFF2061 0.45 +0.1 943,272 - GFF2061 0.45 -0.3 943,272 - GFF2061 0.45 -0.2 943,272 - GFF2061 0.45 -0.4 943,388 + GFF2061 0.67 -1.0 943,547 + +1.3 943,548 - -0.2 943,575 + +0.4 943,575 + -0.5 943,576 - +1.0 944,009 + GFF2062 0.30 +1.1 944,010 - GFF2062 0.30 +0.3 944,129 + GFF2062 0.39 -0.3 944,129 + GFF2062 0.39 +0.3 944,129 + GFF2062 0.39 +0.1 944,130 - GFF2062 0.39 -0.1 944,130 - GFF2062 0.39 -0.4 944,130 - GFF2062 0.39 -0.4 944,775 - GFF2062 0.85 -0.3 944,775 - GFF2062 0.85 -0.5 944,819 + GFF2062 0.88 +0.1 944,820 - GFF2062 0.88 -0.7 944,897 + -0.6 944,898 - -0.7 944,898 - +0.3 944,973 - +0.3 944,973 - +0.3 944,990 - -1.0 945,187 + GFF2063 0.29 -0.3 945,487 + GFF2063 0.73 -0.7 945,487 + GFF2063 0.73 +0.4 945,488 - GFF2063 0.73 +0.2 945,553 + GFF2063 0.83 +0.1 945,553 + GFF2063 0.83 +0.3 945,554 - GFF2063 0.83 +0.2 945,554 - GFF2063 0.83 -1.7 945,730 - -0.1 945,731 + -0.8 945,731 + -0.2 945,732 - -0.4 945,732 - -1.3
Or see this region's nucleotide sequence