Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2060 and GFF2061 are separated by 5 nucleotides GFF2061 and GFF2062 are separated by 18 nucleotides
GFF2060 - TRAP transporter solute receptor, unknown substrate 6, at 941,925 to 943,019
GFF2060
GFF2061 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6, at 943,025 to 943,567
GFF2061
GFF2062 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 943,586 to 944,980
GFF2062
Position (kb) 943
944 Strain fitness (log2 ratio) -1
0
1
2 at 942.039 kb on + strand, within GFF2060 at 942.064 kb on - strand, within GFF2060 at 942.222 kb on + strand, within GFF2060 at 942.222 kb on + strand, within GFF2060 at 942.223 kb on - strand, within GFF2060 at 942.226 kb on - strand, within GFF2060 at 942.226 kb on - strand, within GFF2060 at 942.303 kb on + strand, within GFF2060 at 942.348 kb on + strand, within GFF2060 at 942.348 kb on + strand, within GFF2060 at 942.349 kb on - strand, within GFF2060 at 942.361 kb on - strand, within GFF2060 at 942.565 kb on - strand, within GFF2060 at 942.615 kb on + strand, within GFF2060 at 942.615 kb on + strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.619 kb on - strand, within GFF2060 at 942.619 kb on - strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.624 kb on + strand, within GFF2060 at 942.759 kb on + strand, within GFF2060 at 942.759 kb on + strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.849 kb on + strand, within GFF2060 at 942.849 kb on + strand, within GFF2060 at 942.907 kb on - strand, within GFF2060 at 942.921 kb on + strand at 942.921 kb on + strand at 942.921 kb on + strand at 942.921 kb on + strand at 942.921 kb on + strand at 942.976 kb on - strand at 943.215 kb on - strand, within GFF2061 at 943.271 kb on + strand, within GFF2061 at 943.272 kb on - strand, within GFF2061 at 943.272 kb on - strand, within GFF2061 at 943.272 kb on - strand, within GFF2061 at 943.388 kb on + strand, within GFF2061 at 943.547 kb on + strand at 943.548 kb on - strand at 943.575 kb on + strand at 943.575 kb on + strand at 943.576 kb on - strand at 944.009 kb on + strand, within GFF2062 at 944.010 kb on - strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.129 kb on + strand, within GFF2062 at 944.130 kb on - strand, within GFF2062 at 944.130 kb on - strand, within GFF2062 at 944.130 kb on - strand, within GFF2062
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 942,039 + GFF2060 0.10 +2.1 942,064 - GFF2060 0.13 +1.1 942,222 + GFF2060 0.27 +0.1 942,222 + GFF2060 0.27 -0.7 942,223 - GFF2060 0.27 -0.2 942,226 - GFF2060 0.27 +0.3 942,226 - GFF2060 0.27 +0.1 942,303 + GFF2060 0.35 -0.4 942,348 + GFF2060 0.39 -1.3 942,348 + GFF2060 0.39 -0.2 942,349 - GFF2060 0.39 +0.1 942,361 - GFF2060 0.40 +0.2 942,565 - GFF2060 0.58 +0.3 942,615 + GFF2060 0.63 +0.6 942,615 + GFF2060 0.63 -0.4 942,616 - GFF2060 0.63 +0.0 942,616 - GFF2060 0.63 -0.7 942,616 - GFF2060 0.63 +0.3 942,616 - GFF2060 0.63 +0.0 942,618 + GFF2060 0.63 -0.5 942,618 + GFF2060 0.63 +0.3 942,618 + GFF2060 0.63 +0.9 942,619 - GFF2060 0.63 -1.4 942,619 - GFF2060 0.63 -0.5 942,621 + GFF2060 0.64 -0.1 942,621 + GFF2060 0.64 -0.2 942,621 + GFF2060 0.64 -1.3 942,621 + GFF2060 0.64 -0.0 942,621 + GFF2060 0.64 -0.3 942,621 + GFF2060 0.64 -0.8 942,621 + GFF2060 0.64 -0.2 942,622 - GFF2060 0.64 -0.3 942,622 - GFF2060 0.64 +0.6 942,622 - GFF2060 0.64 +0.3 942,622 - GFF2060 0.64 +0.4 942,624 + GFF2060 0.64 -0.3 942,759 + GFF2060 0.76 -0.3 942,759 + GFF2060 0.76 +0.5 942,760 - GFF2060 0.76 +0.9 942,760 - GFF2060 0.76 +0.2 942,760 - GFF2060 0.76 -1.0 942,760 - GFF2060 0.76 +0.3 942,760 - GFF2060 0.76 +1.3 942,849 + GFF2060 0.84 -0.2 942,849 + GFF2060 0.84 -0.5 942,907 - GFF2060 0.90 -0.4 942,921 + -1.0 942,921 + +0.3 942,921 + -1.3 942,921 + +1.4 942,921 + +0.0 942,976 - +0.2 943,215 - GFF2061 0.35 +0.1 943,271 + GFF2061 0.45 +0.1 943,272 - GFF2061 0.45 -0.3 943,272 - GFF2061 0.45 -0.2 943,272 - GFF2061 0.45 -0.4 943,388 + GFF2061 0.67 -1.0 943,547 + +1.3 943,548 - -0.2 943,575 + +0.4 943,575 + -0.5 943,576 - +1.0 944,009 + GFF2062 0.30 +1.1 944,010 - GFF2062 0.30 +0.3 944,129 + GFF2062 0.39 -0.3 944,129 + GFF2062 0.39 +0.3 944,129 + GFF2062 0.39 +0.1 944,130 - GFF2062 0.39 -0.1 944,130 - GFF2062 0.39 -0.4 944,130 - GFF2062 0.39 -0.4
Or see this region's nucleotide sequence