Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2012 and GFF2013 are separated by 155 nucleotides GFF2013 and GFF2014 are separated by 20 nucleotides GFF2014 and GFF2015 are separated by 6 nucleotides
GFF2012 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 887,481 to 889,037
GFF2012
GFF2013 - Chromosome (plasmid) partitioning protein ParB, at 889,193 to 890,119
GFF2013
GFF2014 - FIG00932469: hypothetical protein, at 890,140 to 890,688
GFF2014
GFF2015 - Chromosome (plasmid) partitioning protein ParA, at 890,695 to 891,465
GFF2015
Position (kb) 889
890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.415 kb on + strand, within GFF2012 at 888.415 kb on + strand, within GFF2012 at 888.416 kb on - strand, within GFF2012 at 888.416 kb on - strand, within GFF2012 at 888.416 kb on - strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.601 kb on + strand, within GFF2012 at 888.602 kb on - strand, within GFF2012 at 888.602 kb on - strand, within GFF2012 at 888.602 kb on - strand, within GFF2012 at 889.041 kb on + strand at 889.042 kb on - strand at 889.042 kb on - strand at 889.090 kb on - strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.120 kb on + strand at 889.121 kb on + strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 889.121 kb on - strand at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.288 kb on + strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014 at 890.289 kb on - strand, within GFF2014
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 888,415 + GFF2012 0.60 -1.3 888,415 + GFF2012 0.60 +0.1 888,416 - GFF2012 0.60 -0.6 888,416 - GFF2012 0.60 -0.2 888,416 - GFF2012 0.60 +0.1 888,601 + GFF2012 0.72 +0.1 888,601 + GFF2012 0.72 +0.2 888,601 + GFF2012 0.72 +0.0 888,601 + GFF2012 0.72 +0.4 888,601 + GFF2012 0.72 +1.1 888,601 + GFF2012 0.72 +0.3 888,602 - GFF2012 0.72 +0.4 888,602 - GFF2012 0.72 -1.0 888,602 - GFF2012 0.72 -0.5 889,041 + -2.3 889,042 - +0.2 889,042 - -0.0 889,090 - +0.3 889,120 + -0.0 889,120 + +0.3 889,120 + -2.0 889,120 + +0.5 889,120 + +0.4 889,120 + -0.7 889,120 + +0.1 889,120 + -0.2 889,120 + -0.1 889,120 + +0.7 889,120 + -0.6 889,120 + -0.1 889,120 + -0.4 889,120 + -0.3 889,120 + -0.1 889,120 + +2.3 889,120 + -0.3 889,121 + +1.3 889,121 - +0.0 889,121 - +0.4 889,121 - +0.1 889,121 - +0.3 889,121 - -1.1 889,121 - -0.1 889,121 - +0.4 889,121 - -0.3 889,121 - -0.3 889,121 - +0.1 889,121 - -1.8 889,121 - -0.9 889,121 - -0.4 890,288 + GFF2014 0.27 +0.0 890,288 + GFF2014 0.27 +0.7 890,288 + GFF2014 0.27 -0.1 890,288 + GFF2014 0.27 +0.7 890,288 + GFF2014 0.27 -0.2 890,288 + GFF2014 0.27 +0.3 890,288 + GFF2014 0.27 +0.1 890,289 - GFF2014 0.27 -0.4 890,289 - GFF2014 0.27 +0.3 890,289 - GFF2014 0.27 -1.8 890,289 - GFF2014 0.27 +0.3 890,289 - GFF2014 0.27 -0.2 890,289 - GFF2014 0.27 +0.4
Or see this region's nucleotide sequence