Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1990 and GFF1991 are separated by 130 nucleotides GFF1991 and GFF1992 are separated by 47 nucleotides GFF1992 and GFF1993 overlap by 4 nucleotides
GFF1990 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 866,372 to 868,450
GFF1990
GFF1991 - Possible gluconolactonase, at 868,581 to 869,621
GFF1991
GFF1992 - Transcriptional regulator, TetR family, at 869,669 to 870,406
GFF1992
GFF1993 - putative extracellular solute-binding protein, at 870,403 to 871,347
GFF1993
Position (kb) 868
869
870 Strain fitness (log2 ratio) -1
0
1 at 867.637 kb on - strand, within GFF1990 at 867.637 kb on - strand, within GFF1990 at 867.873 kb on + strand, within GFF1990 at 867.874 kb on - strand, within GFF1990 at 868.032 kb on + strand, within GFF1990 at 868.215 kb on + strand, within GFF1990 at 868.215 kb on + strand, within GFF1990 at 868.215 kb on + strand, within GFF1990 at 868.308 kb on + strand at 868.309 kb on - strand at 868.309 kb on - strand at 868.371 kb on + strand at 868.371 kb on + strand at 868.372 kb on - strand at 868.372 kb on - strand at 868.372 kb on - strand at 868.416 kb on + strand at 868.416 kb on + strand at 868.417 kb on - strand at 868.437 kb on + strand at 868.437 kb on + strand at 868.438 kb on - strand at 868.461 kb on + strand at 868.461 kb on + strand at 868.462 kb on - strand at 868.462 kb on - strand at 868.487 kb on + strand at 868.487 kb on + strand at 868.488 kb on - strand at 868.496 kb on + strand at 868.496 kb on + strand at 868.497 kb on - strand at 868.504 kb on + strand at 868.505 kb on - strand at 868.583 kb on - strand at 869.082 kb on + strand, within GFF1991 at 869.083 kb on - strand, within GFF1991 at 869.178 kb on + strand, within GFF1991 at 869.178 kb on + strand, within GFF1991 at 869.178 kb on + strand, within GFF1991 at 869.178 kb on + strand, within GFF1991 at 869.179 kb on - strand, within GFF1991 at 869.179 kb on - strand, within GFF1991 at 869.179 kb on - strand, within GFF1991 at 869.544 kb on + strand at 869.620 kb on - strand at 869.620 kb on - strand at 869.672 kb on + strand at 869.672 kb on + strand at 869.673 kb on - strand at 869.798 kb on + strand, within GFF1992 at 869.798 kb on + strand, within GFF1992 at 869.864 kb on + strand, within GFF1992 at 869.865 kb on - strand, within GFF1992 at 869.865 kb on - strand, within GFF1992 at 869.867 kb on + strand, within GFF1992 at 869.868 kb on - strand, within GFF1992 at 869.868 kb on - strand, within GFF1992 at 869.868 kb on - strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.050 kb on + strand, within GFF1992 at 870.081 kb on - strand, within GFF1992 at 870.081 kb on - strand, within GFF1992 at 870.200 kb on + strand, within GFF1992 at 870.200 kb on + strand, within GFF1992 at 870.502 kb on + strand, within GFF1993 at 870.554 kb on - strand, within GFF1993
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 867,637 - GFF1990 0.61 +1.3 867,637 - GFF1990 0.61 -0.2 867,873 + GFF1990 0.72 -0.2 867,874 - GFF1990 0.72 +0.2 868,032 + GFF1990 0.80 -0.0 868,215 + GFF1990 0.89 +0.3 868,215 + GFF1990 0.89 +0.2 868,215 + GFF1990 0.89 -0.3 868,308 + +0.4 868,309 - +0.7 868,309 - -0.7 868,371 + +0.8 868,371 + -1.0 868,372 - +0.1 868,372 - -0.3 868,372 - +0.4 868,416 + -0.1 868,416 + -0.3 868,417 - +0.5 868,437 + +0.8 868,437 + +0.7 868,438 - -0.3 868,461 + +0.2 868,461 + +0.3 868,462 - -1.7 868,462 - -0.3 868,487 + +0.1 868,487 + -0.4 868,488 - +0.6 868,496 + -0.4 868,496 + +0.3 868,497 - -0.3 868,504 + +0.0 868,505 - -0.0 868,583 - +0.0 869,082 + GFF1991 0.48 -0.2 869,083 - GFF1991 0.48 -0.7 869,178 + GFF1991 0.57 -0.1 869,178 + GFF1991 0.57 -0.3 869,178 + GFF1991 0.57 -0.6 869,178 + GFF1991 0.57 -0.1 869,179 - GFF1991 0.57 -0.0 869,179 - GFF1991 0.57 -0.3 869,179 - GFF1991 0.57 -0.2 869,544 + -0.3 869,620 - +0.3 869,620 - -0.1 869,672 + +0.5 869,672 + -0.3 869,673 - +0.7 869,798 + GFF1992 0.17 +0.0 869,798 + GFF1992 0.17 +0.3 869,864 + GFF1992 0.26 -1.1 869,865 - GFF1992 0.27 -1.3 869,865 - GFF1992 0.27 -0.4 869,867 + GFF1992 0.27 +1.1 869,868 - GFF1992 0.27 +0.2 869,868 - GFF1992 0.27 -0.1 869,868 - GFF1992 0.27 +0.6 870,050 + GFF1992 0.52 +1.1 870,050 + GFF1992 0.52 -0.3 870,050 + GFF1992 0.52 -0.3 870,050 + GFF1992 0.52 +0.4 870,050 + GFF1992 0.52 +0.2 870,050 + GFF1992 0.52 +0.6 870,081 - GFF1992 0.56 +0.3 870,081 - GFF1992 0.56 +1.3 870,200 + GFF1992 0.72 -0.7 870,200 + GFF1992 0.72 +0.4 870,502 + GFF1993 0.10 +0.7 870,554 - GFF1993 0.16 +0.0
Or see this region's nucleotide sequence