Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1848 and GFF1849 overlap by 4 nucleotides GFF1849 and GFF1850 are separated by 119 nucleotides GFF1850 and GFF1851 are separated by 129 nucleotides GFF1851 and GFF1852 overlap by 8 nucleotides
GFF1848 - hypothetical protein, at 710,777 to 711,970
GFF1848
GFF1849 - Conserved domain protein, at 711,967 to 712,638
GFF1849
GFF1850 - Conserved domain protein, at 712,758 to 713,435
GFF1850
GFF1851 - hypothetical protein, at 713,565 to 714,302
GFF1851
GFF1852 - hypothetical protein, at 714,295 to 715,638
GFF1852
Position (kb) 712
713
714 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 712.060 kb on + strand, within GFF1849 at 712.060 kb on + strand, within GFF1849 at 712.060 kb on + strand, within GFF1849 at 712.061 kb on - strand, within GFF1849 at 712.061 kb on - strand, within GFF1849 at 712.061 kb on - strand, within GFF1849 at 712.061 kb on - strand, within GFF1849 at 712.061 kb on - strand, within GFF1849 at 712.087 kb on + strand, within GFF1849 at 712.087 kb on + strand, within GFF1849 at 712.088 kb on - strand, within GFF1849 at 712.088 kb on - strand, within GFF1849 at 712.147 kb on + strand, within GFF1849 at 712.327 kb on + strand, within GFF1849 at 712.462 kb on + strand, within GFF1849 at 712.462 kb on + strand, within GFF1849 at 712.462 kb on + strand, within GFF1849 at 712.462 kb on + strand, within GFF1849 at 712.463 kb on - strand, within GFF1849 at 712.463 kb on - strand, within GFF1849 at 712.463 kb on - strand, within GFF1849 at 712.463 kb on - strand, within GFF1849 at 712.463 kb on - strand, within GFF1849 at 712.463 kb on - strand, within GFF1849 at 712.597 kb on + strand at 712.597 kb on + strand at 712.597 kb on + strand at 712.597 kb on + strand at 712.597 kb on + strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.598 kb on - strand at 712.636 kb on + strand at 712.636 kb on + strand at 712.637 kb on - strand at 712.637 kb on - strand at 712.637 kb on - strand at 712.674 kb on + strand at 712.674 kb on + strand at 712.674 kb on + strand at 712.674 kb on + strand at 712.674 kb on + strand at 712.785 kb on + strand at 712.785 kb on + strand at 712.785 kb on + strand at 712.785 kb on - strand at 712.786 kb on - strand at 712.786 kb on - strand at 712.812 kb on + strand at 712.812 kb on + strand at 712.812 kb on + strand at 712.812 kb on + strand at 712.812 kb on + strand at 712.812 kb on + strand at 712.812 kb on + strand at 712.813 kb on - strand at 712.813 kb on - strand at 712.813 kb on - strand at 712.813 kb on - strand at 712.813 kb on - strand at 712.881 kb on + strand, within GFF1850 at 712.881 kb on + strand, within GFF1850 at 712.881 kb on + strand, within GFF1850 at 712.881 kb on + strand, within GFF1850 at 712.881 kb on + strand, within GFF1850 at 712.882 kb on - strand, within GFF1850 at 712.882 kb on - strand, within GFF1850 at 712.882 kb on - strand, within GFF1850 at 712.882 kb on - strand, within GFF1850 at 712.926 kb on + strand, within GFF1850 at 712.926 kb on + strand, within GFF1850 at 712.927 kb on - strand, within GFF1850 at 712.959 kb on + strand, within GFF1850 at 712.960 kb on - strand, within GFF1850 at 712.960 kb on - strand, within GFF1850 at 712.960 kb on - strand, within GFF1850 at 712.960 kb on - strand, within GFF1850 at 712.960 kb on - strand, within GFF1850 at 712.960 kb on - strand, within GFF1850 at 712.965 kb on + strand, within GFF1850 at 712.965 kb on + strand, within GFF1850 at 712.965 kb on + strand, within GFF1850 at 712.965 kb on + strand, within GFF1850 at 712.966 kb on - strand, within GFF1850 at 712.966 kb on - strand, within GFF1850 at 712.966 kb on - strand, within GFF1850 at 713.034 kb on + strand, within GFF1850 at 713.034 kb on + strand, within GFF1850 at 713.034 kb on + strand, within GFF1850 at 713.034 kb on + strand, within GFF1850 at 713.034 kb on + strand, within GFF1850 at 713.034 kb on + strand, within GFF1850 at 713.035 kb on - strand, within GFF1850 at 713.035 kb on - strand, within GFF1850 at 713.035 kb on - strand, within GFF1850 at 713.035 kb on - strand, within GFF1850 at 713.079 kb on + strand, within GFF1850 at 713.079 kb on + strand, within GFF1850 at 713.079 kb on + strand, within GFF1850 at 713.079 kb on + strand, within GFF1850 at 713.079 kb on + strand, within GFF1850 at 713.079 kb on + strand, within GFF1850 at 713.079 kb on + strand, within GFF1850 at 713.080 kb on - strand, within GFF1850 at 713.080 kb on - strand, within GFF1850 at 713.080 kb on - strand, within GFF1850 at 713.080 kb on - strand, within GFF1850 at 713.080 kb on - strand, within GFF1850 at 713.080 kb on - strand, within GFF1850 at 713.194 kb on - strand, within GFF1850 at 713.214 kb on + strand, within GFF1850 at 713.214 kb on + strand, within GFF1850 at 713.214 kb on + strand, within GFF1850 at 713.214 kb on + strand, within GFF1850 at 713.214 kb on + strand, within GFF1850 at 713.214 kb on + strand, within GFF1850 at 713.214 kb on + strand, within GFF1850 at 713.215 kb on - strand, within GFF1850 at 713.215 kb on - strand, within GFF1850 at 713.215 kb on - strand, within GFF1850 at 713.215 kb on - strand, within GFF1850 at 713.215 kb on - strand, within GFF1850 at 713.215 kb on - strand, within GFF1850 at 713.223 kb on + strand, within GFF1850 at 713.224 kb on - strand, within GFF1850 at 713.224 kb on - strand, within GFF1850 at 713.524 kb on - strand at 713.569 kb on + strand at 713.569 kb on + strand at 713.569 kb on + strand at 713.570 kb on - strand at 713.570 kb on - strand at 713.686 kb on + strand, within GFF1851 at 713.686 kb on + strand, within GFF1851 at 713.686 kb on + strand, within GFF1851 at 713.687 kb on - strand, within GFF1851 at 713.687 kb on - strand, within GFF1851 at 713.687 kb on - strand, within GFF1851 at 713.697 kb on + strand, within GFF1851 at 713.698 kb on - strand, within GFF1851 at 713.698 kb on - strand, within GFF1851 at 713.698 kb on - strand, within GFF1851 at 713.698 kb on - strand, within GFF1851 at 713.706 kb on + strand, within GFF1851 at 713.706 kb on + strand, within GFF1851 at 713.706 kb on + strand, within GFF1851 at 713.706 kb on + strand, within GFF1851 at 713.706 kb on + strand, within GFF1851 at 713.706 kb on + strand, within GFF1851 at 713.707 kb on - strand, within GFF1851 at 713.707 kb on - strand, within GFF1851 at 713.707 kb on - strand, within GFF1851 at 713.707 kb on - strand, within GFF1851 at 713.707 kb on - strand, within GFF1851 at 713.707 kb on - strand, within GFF1851 at 713.742 kb on + strand, within GFF1851 at 713.742 kb on + strand, within GFF1851 at 713.742 kb on + strand, within GFF1851 at 713.742 kb on + strand, within GFF1851 at 713.742 kb on + strand, within GFF1851 at 713.743 kb on - strand, within GFF1851 at 713.743 kb on - strand, within GFF1851 at 713.743 kb on - strand, within GFF1851 at 713.744 kb on - strand, within GFF1851 at 713.817 kb on + strand, within GFF1851 at 713.817 kb on + strand, within GFF1851 at 713.817 kb on + strand, within GFF1851 at 713.818 kb on - strand, within GFF1851 at 713.818 kb on - strand, within GFF1851 at 713.943 kb on + strand, within GFF1851 at 713.943 kb on + strand, within GFF1851 at 713.943 kb on + strand, within GFF1851 at 713.943 kb on + strand, within GFF1851 at 713.943 kb on + strand, within GFF1851 at 713.943 kb on + strand, within GFF1851 at 713.943 kb on + strand, within GFF1851 at 713.943 kb on + strand, within GFF1851 at 713.944 kb on - strand, within GFF1851 at 713.944 kb on - strand, within GFF1851 at 713.944 kb on - strand, within GFF1851 at 713.944 kb on - strand, within GFF1851 at 713.944 kb on - strand, within GFF1851 at 713.944 kb on - strand, within GFF1851 at 713.946 kb on - strand, within GFF1851 at 714.045 kb on + strand, within GFF1851 at 714.045 kb on + strand, within GFF1851 at 714.045 kb on + strand, within GFF1851 at 714.045 kb on + strand, within GFF1851 at 714.045 kb on + strand, within GFF1851 at 714.045 kb on + strand, within GFF1851 at 714.046 kb on - strand, within GFF1851 at 714.046 kb on - strand, within GFF1851 at 714.046 kb on - strand, within GFF1851 at 714.046 kb on - strand, within GFF1851 at 714.046 kb on - strand, within GFF1851 at 714.054 kb on + strand, within GFF1851 at 714.054 kb on + strand, within GFF1851 at 714.054 kb on + strand, within GFF1851 at 714.055 kb on - strand, within GFF1851 at 714.055 kb on - strand, within GFF1851 at 714.198 kb on + strand, within GFF1851 at 714.198 kb on + strand, within GFF1851 at 714.198 kb on + strand, within GFF1851 at 714.199 kb on - strand, within GFF1851 at 714.199 kb on - strand, within GFF1851 at 714.213 kb on + strand, within GFF1851 at 714.213 kb on + strand, within GFF1851 at 714.213 kb on + strand, within GFF1851 at 714.213 kb on + strand, within GFF1851 at 714.213 kb on + strand, within GFF1851 at 714.214 kb on - strand, within GFF1851 at 714.214 kb on - strand, within GFF1851 at 714.214 kb on - strand, within GFF1851 at 714.214 kb on - strand, within GFF1851 at 714.214 kb on - strand, within GFF1851 at 714.214 kb on - strand, within GFF1851 at 714.214 kb on - strand, within GFF1851 at 714.216 kb on + strand, within GFF1851 at 714.216 kb on + strand, within GFF1851 at 714.216 kb on + strand, within GFF1851 at 714.216 kb on + strand, within GFF1851 at 714.216 kb on + strand, within GFF1851 at 714.216 kb on + strand, within GFF1851 at 714.216 kb on + strand, within GFF1851 at 714.216 kb on + strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.217 kb on - strand, within GFF1851 at 714.249 kb on + strand at 714.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 712,060 + GFF1849 0.14 -0.6 712,060 + GFF1849 0.14 +0.0 712,060 + GFF1849 0.14 -0.8 712,061 - GFF1849 0.14 -0.6 712,061 - GFF1849 0.14 -0.6 712,061 - GFF1849 0.14 -0.3 712,061 - GFF1849 0.14 -0.6 712,061 - GFF1849 0.14 -0.9 712,087 + GFF1849 0.18 +0.3 712,087 + GFF1849 0.18 -0.0 712,088 - GFF1849 0.18 -0.6 712,088 - GFF1849 0.18 -0.3 712,147 + GFF1849 0.27 +0.5 712,327 + GFF1849 0.54 -1.6 712,462 + GFF1849 0.74 -1.0 712,462 + GFF1849 0.74 -0.1 712,462 + GFF1849 0.74 -0.0 712,462 + GFF1849 0.74 +0.0 712,463 - GFF1849 0.74 +0.4 712,463 - GFF1849 0.74 -0.6 712,463 - GFF1849 0.74 -0.6 712,463 - GFF1849 0.74 +1.0 712,463 - GFF1849 0.74 +0.7 712,463 - GFF1849 0.74 -1.2 712,597 + -0.5 712,597 + -0.7 712,597 + -0.6 712,597 + +0.8 712,597 + +0.0 712,598 - +0.1 712,598 - -0.4 712,598 - -0.4 712,598 - -0.0 712,598 - +0.0 712,598 - -0.2 712,598 - -0.6 712,598 - -0.8 712,598 - -0.4 712,598 - -0.5 712,598 - +1.4 712,598 - -0.3 712,598 - +0.5 712,598 - -0.1 712,636 + +0.5 712,636 + +0.7 712,637 - -0.5 712,637 - -0.1 712,637 - -0.2 712,674 + -0.2 712,674 + -0.2 712,674 + -0.6 712,674 + -0.1 712,674 + +0.4 712,785 + -1.0 712,785 + -0.1 712,785 + -0.2 712,785 - +0.4 712,786 - -0.5 712,786 - +0.1 712,812 + -0.3 712,812 + +0.8 712,812 + -0.1 712,812 + -0.5 712,812 + -0.8 712,812 + -0.4 712,812 + -0.6 712,813 - +0.4 712,813 - +0.4 712,813 - -0.5 712,813 - -1.0 712,813 - -0.2 712,881 + GFF1850 0.18 +0.0 712,881 + GFF1850 0.18 +0.4 712,881 + GFF1850 0.18 +0.5 712,881 + GFF1850 0.18 +0.8 712,881 + GFF1850 0.18 +0.5 712,882 - GFF1850 0.18 -0.1 712,882 - GFF1850 0.18 +0.4 712,882 - GFF1850 0.18 +0.3 712,882 - GFF1850 0.18 -1.7 712,926 + GFF1850 0.25 -0.2 712,926 + GFF1850 0.25 -0.3 712,927 - GFF1850 0.25 +0.3 712,959 + GFF1850 0.30 -0.6 712,960 - GFF1850 0.30 -0.4 712,960 - GFF1850 0.30 -0.3 712,960 - GFF1850 0.30 -0.3 712,960 - GFF1850 0.30 -0.2 712,960 - GFF1850 0.30 +0.1 712,960 - GFF1850 0.30 +0.1 712,965 + GFF1850 0.31 -0.8 712,965 + GFF1850 0.31 +1.6 712,965 + GFF1850 0.31 +1.4 712,965 + GFF1850 0.31 -0.2 712,966 - GFF1850 0.31 -0.6 712,966 - GFF1850 0.31 -0.3 712,966 - GFF1850 0.31 +0.2 713,034 + GFF1850 0.41 -0.8 713,034 + GFF1850 0.41 +0.5 713,034 + GFF1850 0.41 -0.4 713,034 + GFF1850 0.41 +0.1 713,034 + GFF1850 0.41 +0.4 713,034 + GFF1850 0.41 +0.4 713,035 - GFF1850 0.41 +0.2 713,035 - GFF1850 0.41 +0.4 713,035 - GFF1850 0.41 -0.6 713,035 - GFF1850 0.41 +0.8 713,079 + GFF1850 0.47 -0.8 713,079 + GFF1850 0.47 +0.0 713,079 + GFF1850 0.47 +0.2 713,079 + GFF1850 0.47 +0.1 713,079 + GFF1850 0.47 -0.1 713,079 + GFF1850 0.47 -0.6 713,079 + GFF1850 0.47 +0.2 713,080 - GFF1850 0.47 -0.4 713,080 - GFF1850 0.47 -0.7 713,080 - GFF1850 0.47 +0.1 713,080 - GFF1850 0.47 +0.2 713,080 - GFF1850 0.47 -0.4 713,080 - GFF1850 0.47 -0.6 713,194 - GFF1850 0.64 +2.4 713,214 + GFF1850 0.67 -0.6 713,214 + GFF1850 0.67 -0.1 713,214 + GFF1850 0.67 -0.6 713,214 + GFF1850 0.67 +0.1 713,214 + GFF1850 0.67 -0.1 713,214 + GFF1850 0.67 -0.0 713,214 + GFF1850 0.67 -0.6 713,215 - GFF1850 0.67 +0.6 713,215 - GFF1850 0.67 +0.5 713,215 - GFF1850 0.67 +0.6 713,215 - GFF1850 0.67 -0.3 713,215 - GFF1850 0.67 -0.3 713,215 - GFF1850 0.67 -0.3 713,223 + GFF1850 0.69 -2.0 713,224 - GFF1850 0.69 -0.6 713,224 - GFF1850 0.69 +1.1 713,524 - -2.8 713,569 + -5.1 713,569 + -1.0 713,569 + -4.1 713,570 - -2.2 713,570 - -2.6 713,686 + GFF1851 0.16 -3.8 713,686 + GFF1851 0.16 -2.8 713,686 + GFF1851 0.16 -3.1 713,687 - GFF1851 0.17 -5.1 713,687 - GFF1851 0.17 -2.0 713,687 - GFF1851 0.17 -2.7 713,697 + GFF1851 0.18 -2.1 713,698 - GFF1851 0.18 -4.1 713,698 - GFF1851 0.18 -3.3 713,698 - GFF1851 0.18 -4.3 713,698 - GFF1851 0.18 -1.5 713,706 + GFF1851 0.19 -3.7 713,706 + GFF1851 0.19 -4.5 713,706 + GFF1851 0.19 -3.0 713,706 + GFF1851 0.19 -3.1 713,706 + GFF1851 0.19 -4.1 713,706 + GFF1851 0.19 -1.9 713,707 - GFF1851 0.19 -4.4 713,707 - GFF1851 0.19 -1.2 713,707 - GFF1851 0.19 -1.8 713,707 - GFF1851 0.19 -2.7 713,707 - GFF1851 0.19 -2.5 713,707 - GFF1851 0.19 -4.4 713,742 + GFF1851 0.24 -3.6 713,742 + GFF1851 0.24 -1.8 713,742 + GFF1851 0.24 -4.6 713,742 + GFF1851 0.24 -2.1 713,742 + GFF1851 0.24 -5.2 713,743 - GFF1851 0.24 -1.2 713,743 - GFF1851 0.24 -3.3 713,743 - GFF1851 0.24 -2.6 713,744 - GFF1851 0.24 -2.3 713,817 + GFF1851 0.34 -1.5 713,817 + GFF1851 0.34 -1.5 713,817 + GFF1851 0.34 -3.1 713,818 - GFF1851 0.34 +0.4 713,818 - GFF1851 0.34 -6.3 713,943 + GFF1851 0.51 -1.6 713,943 + GFF1851 0.51 -4.1 713,943 + GFF1851 0.51 -5.3 713,943 + GFF1851 0.51 -1.6 713,943 + GFF1851 0.51 -2.0 713,943 + GFF1851 0.51 -4.3 713,943 + GFF1851 0.51 -1.7 713,943 + GFF1851 0.51 -4.7 713,944 - GFF1851 0.51 -6.4 713,944 - GFF1851 0.51 -4.6 713,944 - GFF1851 0.51 -2.0 713,944 - GFF1851 0.51 -5.6 713,944 - GFF1851 0.51 -1.0 713,944 - GFF1851 0.51 -3.3 713,946 - GFF1851 0.52 -4.0 714,045 + GFF1851 0.65 -1.8 714,045 + GFF1851 0.65 -3.3 714,045 + GFF1851 0.65 -2.6 714,045 + GFF1851 0.65 -3.3 714,045 + GFF1851 0.65 -2.0 714,045 + GFF1851 0.65 -3.4 714,046 - GFF1851 0.65 -4.8 714,046 - GFF1851 0.65 -3.5 714,046 - GFF1851 0.65 -4.8 714,046 - GFF1851 0.65 -1.6 714,046 - GFF1851 0.65 -3.9 714,054 + GFF1851 0.66 -4.2 714,054 + GFF1851 0.66 -5.0 714,054 + GFF1851 0.66 -5.5 714,055 - GFF1851 0.66 -5.9 714,055 - GFF1851 0.66 -4.3 714,198 + GFF1851 0.86 -4.2 714,198 + GFF1851 0.86 -4.9 714,198 + GFF1851 0.86 -3.7 714,199 - GFF1851 0.86 -4.2 714,199 - GFF1851 0.86 -2.4 714,213 + GFF1851 0.88 -3.8 714,213 + GFF1851 0.88 -1.8 714,213 + GFF1851 0.88 -4.2 714,213 + GFF1851 0.88 -4.4 714,213 + GFF1851 0.88 -3.0 714,214 - GFF1851 0.88 -1.5 714,214 - GFF1851 0.88 -2.3 714,214 - GFF1851 0.88 -1.5 714,214 - GFF1851 0.88 -1.2 714,214 - GFF1851 0.88 -1.8 714,214 - GFF1851 0.88 -1.6 714,214 - GFF1851 0.88 -1.8 714,216 + GFF1851 0.88 -1.6 714,216 + GFF1851 0.88 -3.4 714,216 + GFF1851 0.88 -5.4 714,216 + GFF1851 0.88 -1.5 714,216 + GFF1851 0.88 -1.2 714,216 + GFF1851 0.88 -0.2 714,216 + GFF1851 0.88 -2.5 714,216 + GFF1851 0.88 -4.5 714,217 - GFF1851 0.88 -4.3 714,217 - GFF1851 0.88 -3.3 714,217 - GFF1851 0.88 -1.6 714,217 - GFF1851 0.88 -4.5 714,217 - GFF1851 0.88 -1.0 714,217 - GFF1851 0.88 -3.8 714,217 - GFF1851 0.88 -3.5 714,217 - GFF1851 0.88 -2.0 714,217 - GFF1851 0.88 +0.4 714,217 - GFF1851 0.88 -3.8 714,249 + -4.1 714,297 - -0.1
Or see this region's nucleotide sequence