Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1756 and GFF1757 are separated by 86 nucleotides GFF1757 and GFF1758 overlap by 4 nucleotides
GFF1756 - Threonine dehydratase (EC 4.3.1.19), at 619,214 to 620,182
GFF1756
GFF1757 - response regulator in two-component regulatory system with PhoQ, at 620,269 to 620,976
GFF1757
GFF1758 - periplasmic sensor signal transduction histidine kinase, at 620,973 to 622,346
GFF1758
Position (kb) 620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 619.269 kb on - strand at 619.269 kb on - strand at 619.397 kb on + strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.697 kb on + strand, within GFF1756 at 619.698 kb on + strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.698 kb on - strand, within GFF1756 at 619.742 kb on + strand, within GFF1756 at 619.742 kb on + strand, within GFF1756 at 619.743 kb on - strand, within GFF1756 at 619.850 kb on + strand, within GFF1756 at 619.850 kb on + strand, within GFF1756 at 620.329 kb on + strand at 620.329 kb on + strand at 620.329 kb on + strand at 620.329 kb on + strand at 620.330 kb on - strand at 620.331 kb on + strand at 620.331 kb on + strand at 620.332 kb on - strand at 620.332 kb on - strand at 620.581 kb on + strand, within GFF1757 at 620.581 kb on + strand, within GFF1757 at 620.581 kb on + strand, within GFF1757 at 620.582 kb on - strand, within GFF1757 at 620.582 kb on - strand, within GFF1757 at 620.770 kb on + strand, within GFF1757 at 620.770 kb on + strand, within GFF1757 at 620.771 kb on - strand, within GFF1757 at 620.771 kb on - strand, within GFF1757 at 620.833 kb on + strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 620.834 kb on - strand, within GFF1757 at 621.027 kb on + strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.028 kb on - strand at 621.030 kb on + strand at 621.031 kb on - strand at 621.078 kb on + strand at 621.078 kb on + strand at 621.079 kb on - strand at 621.079 kb on - strand at 621.079 kb on - strand at 621.237 kb on + strand, within GFF1758 at 621.237 kb on + strand, within GFF1758 at 621.238 kb on - strand, within GFF1758 at 621.360 kb on + strand, within GFF1758 at 621.360 kb on + strand, within GFF1758 at 621.360 kb on + strand, within GFF1758 at 621.360 kb on + strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.361 kb on - strand, within GFF1758 at 621.824 kb on - strand, within GFF1758
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 619,269 - +0.1 619,269 - -0.6 619,397 + GFF1756 0.19 -0.5 619,398 - GFF1756 0.19 -0.1 619,398 - GFF1756 0.19 -0.0 619,398 - GFF1756 0.19 -0.6 619,398 - GFF1756 0.19 +0.8 619,398 - GFF1756 0.19 +0.6 619,398 - GFF1756 0.19 +0.5 619,697 + GFF1756 0.50 -1.4 619,697 + GFF1756 0.50 -0.6 619,697 + GFF1756 0.50 -0.2 619,697 + GFF1756 0.50 -1.6 619,697 + GFF1756 0.50 -0.6 619,698 + GFF1756 0.50 +0.8 619,698 - GFF1756 0.50 -0.8 619,698 - GFF1756 0.50 -1.1 619,698 - GFF1756 0.50 +1.4 619,698 - GFF1756 0.50 -0.2 619,698 - GFF1756 0.50 +0.7 619,742 + GFF1756 0.54 +0.8 619,742 + GFF1756 0.54 +0.3 619,743 - GFF1756 0.55 +0.5 619,850 + GFF1756 0.66 -0.0 619,850 + GFF1756 0.66 -0.3 620,329 + +0.1 620,329 + -0.9 620,329 + -2.0 620,329 + -0.8 620,330 - -1.0 620,331 + -1.5 620,331 + -3.0 620,332 - -1.8 620,332 - -1.0 620,581 + GFF1757 0.44 -2.1 620,581 + GFF1757 0.44 -1.2 620,581 + GFF1757 0.44 -0.9 620,582 - GFF1757 0.44 -1.3 620,582 - GFF1757 0.44 -0.6 620,770 + GFF1757 0.71 -1.0 620,770 + GFF1757 0.71 -1.0 620,771 - GFF1757 0.71 +0.0 620,771 - GFF1757 0.71 -2.0 620,833 + GFF1757 0.80 -0.7 620,834 - GFF1757 0.80 -1.0 620,834 - GFF1757 0.80 -1.5 620,834 - GFF1757 0.80 -1.0 621,027 + -1.3 621,028 - -0.5 621,028 - -0.4 621,028 - -0.2 621,028 - +1.0 621,030 + -1.1 621,031 - -0.7 621,078 + -1.0 621,078 + -1.2 621,079 - -1.2 621,079 - -1.1 621,079 - -1.3 621,237 + GFF1758 0.19 -0.9 621,237 + GFF1758 0.19 -1.2 621,238 - GFF1758 0.19 -1.3 621,360 + GFF1758 0.28 -1.3 621,360 + GFF1758 0.28 -1.2 621,360 + GFF1758 0.28 -1.5 621,360 + GFF1758 0.28 -0.3 621,361 - GFF1758 0.28 -1.3 621,361 - GFF1758 0.28 +0.4 621,361 - GFF1758 0.28 -1.3 621,361 - GFF1758 0.28 -0.2 621,361 - GFF1758 0.28 +0.4 621,361 - GFF1758 0.28 -1.5 621,824 - GFF1758 0.62 -1.3
Or see this region's nucleotide sequence