Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1686 and GFF1687 overlap by 1 nucleotides GFF1687 and GFF1688 are separated by 9 nucleotides GFF1688 and GFF1689 are separated by 4 nucleotides
GFF1686 - Phenylacetate-CoA oxygenase, PaaH subunit, at 538,287 to 538,583
GFF1686
GFF1687 - Phenylacetate-CoA oxygenase, PaaI subunit, at 538,583 to 539,425
GFF1687
GFF1688 - Phenylacetate-CoA oxygenase, PaaJ subunit, at 539,435 to 539,941
GFF1688
GFF1689 - Phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 539,946 to 541,052
GFF1689
Position (kb) 539
540 Strain fitness (log2 ratio) -1
0
1
2 at 538.534 kb on - strand, within GFF1686 at 538.534 kb on - strand, within GFF1686 at 538.551 kb on + strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.607 kb on + strand at 538.608 kb on - strand at 538.745 kb on + strand, within GFF1687 at 538.853 kb on + strand, within GFF1687 at 538.853 kb on + strand, within GFF1687 at 538.853 kb on + strand, within GFF1687 at 538.854 kb on - strand, within GFF1687 at 538.946 kb on + strand, within GFF1687 at 538.976 kb on + strand, within GFF1687 at 539.072 kb on + strand, within GFF1687 at 539.324 kb on + strand, within GFF1687 at 539.324 kb on + strand, within GFF1687 at 539.573 kb on + strand, within GFF1688 at 539.573 kb on + strand, within GFF1688 at 539.573 kb on + strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.723 kb on + strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.891 kb on + strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.924 kb on + strand at 539.924 kb on + strand at 539.925 kb on - strand at 539.937 kb on - strand at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.399 kb on + strand, within GFF1689 at 540.400 kb on - strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.462 kb on + strand, within GFF1689 at 540.463 kb on - strand, within GFF1689
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 538,534 - GFF1686 0.83 -0.1 538,534 - GFF1686 0.83 +0.1 538,551 + GFF1686 0.89 -0.4 538,552 - GFF1686 0.89 +0.3 538,552 - GFF1686 0.89 -0.2 538,552 - GFF1686 0.89 +0.7 538,552 - GFF1686 0.89 -1.7 538,552 - GFF1686 0.89 +0.6 538,607 + +0.9 538,608 - -0.6 538,745 + GFF1687 0.19 -0.1 538,853 + GFF1687 0.32 -0.3 538,853 + GFF1687 0.32 +0.1 538,853 + GFF1687 0.32 +2.7 538,854 - GFF1687 0.32 +1.3 538,946 + GFF1687 0.43 +0.1 538,976 + GFF1687 0.47 +0.2 539,072 + GFF1687 0.58 +0.2 539,324 + GFF1687 0.88 -0.3 539,324 + GFF1687 0.88 +0.1 539,573 + GFF1688 0.27 -0.5 539,573 + GFF1688 0.27 -0.4 539,573 + GFF1688 0.27 +0.7 539,574 - GFF1688 0.27 +0.3 539,574 - GFF1688 0.27 -0.4 539,574 - GFF1688 0.27 -0.7 539,574 - GFF1688 0.27 -1.5 539,723 + GFF1688 0.57 -0.6 539,724 - GFF1688 0.57 +1.3 539,724 - GFF1688 0.57 -0.1 539,724 - GFF1688 0.57 -0.3 539,891 + -1.3 539,892 - +0.7 539,892 - +0.7 539,892 - -0.2 539,892 - -0.3 539,892 - -0.1 539,892 - -0.4 539,924 + +1.1 539,924 + +0.2 539,925 - +0.0 539,937 - +0.3 540,123 + GFF1689 0.16 +0.2 540,123 + GFF1689 0.16 -0.2 540,123 + GFF1689 0.16 +0.1 540,123 + GFF1689 0.16 +0.3 540,399 + GFF1689 0.41 +0.2 540,400 - GFF1689 0.41 -0.7 540,462 + GFF1689 0.47 +0.5 540,462 + GFF1689 0.47 +0.6 540,462 + GFF1689 0.47 +0.3 540,463 - GFF1689 0.47 -0.4
Or see this region's nucleotide sequence