Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1642

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1640 and GFF1641 are separated by 25 nucleotidesGFF1641 and GFF1642 are separated by 6 nucleotidesGFF1642 and GFF1643 are separated by 1 nucleotides GFF1640 - amino acid ABC transporter, ATP-binding protein, at 495,579 to 496,328 GFF1640 GFF1641 - Phytanoyl-CoA dioxygenase, at 496,354 to 497,172 GFF1641 GFF1642 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 497,179 to 497,955 GFF1642 GFF1643 - Dihydropyrimidinase (EC 3.5.2.2), at 497,957 to 499,372 GFF1643 Position (kb) 497 498Strain fitness (log2 ratio) -2 -1 0 1at 496.670 kb on - strand, within GFF1641at 497.137 kb on + strandat 497.622 kb on - strand, within GFF1642at 498.511 kb on - strand, within GFF1643at 498.541 kb on - strand, within GFF1643at 498.565 kb on - strand, within GFF1643at 498.658 kb on - strand, within GFF1643at 498.744 kb on + strand, within GFF1643at 498.745 kb on - strand, within GFF1643at 498.900 kb on + strand, within GFF1643

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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496,670 - GFF1641 0.39 -0.1
497,137 + -1.3
497,622 - GFF1642 0.57 -0.2
498,511 - GFF1643 0.39 +0.7
498,541 - GFF1643 0.41 -1.8
498,565 - GFF1643 0.43 +0.2
498,658 - GFF1643 0.50 +0.5
498,744 + GFF1643 0.56 -0.4
498,745 - GFF1643 0.56 -0.4
498,900 + GFF1643 0.67 -0.2

Or see this region's nucleotide sequence