Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1548

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
402,526	+		GFF1547	0.19	+0.0
402,679	+		GFF1547	0.35	-0.7
402,758	-		GFF1547	0.43	+0.7
402,938	-		GFF1547	0.61	+0.3
402,938	-		GFF1547	0.61	-0.3
402,982	+		GFF1547	0.66	+1.3
402,982	+		GFF1547	0.66	+0.4
402,983	-		GFF1547	0.66	-0.0
403,330	+				-1.6
403,401	+				+1.0
403,402	-				+0.4
403,402	-				-0.6
403,647	+		GFF1548	0.26	+1.0
403,648	-		GFF1548	0.26	+0.4
403,648	-		GFF1548	0.26	-1.1
403,648	-		GFF1548	0.26	+0.5
403,648	-		GFF1548	0.26	-0.7
403,725	+		GFF1548	0.33	+1.2
403,725	+		GFF1548	0.33	+0.7
403,726	-		GFF1548	0.33	-0.0
403,726	-		GFF1548	0.33	+0.6
403,726	-		GFF1548	0.33	+0.4
403,726	-		GFF1548	0.33	+0.9
403,726	-		GFF1548	0.33	+1.1
403,744	-		GFF1548	0.34	-1.0
403,869	+		GFF1548	0.45	+0.8
404,515	+				-0.8
404,516	-				-0.0
404,653	+				+0.1
404,653	+				+2.0
404,654	-				+0.1