Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1403 and GFF1404 are separated by 16 nucleotides GFF1404 and GFF1405 are separated by 9 nucleotides GFF1405 and GFF1406 are separated by 2 nucleotides
GFF1403 - EAL domain protein, at 264,951 to 266,150
GFF1403
GFF1404 - Flagellar hook-associated protein FlgL, at 266,167 to 267,384
GFF1404
GFF1405 - hypothetical protein, at 267,394 to 267,525
GFF1405
GFF1406 - Flagellar hook-associated protein FlgK, at 267,528 to 269,441
GFF1406
Position (kb) 266
267
268 Strain fitness (log2 ratio) -2
-1
0
1 at 265.243 kb on + strand, within GFF1403 at 265.243 kb on + strand, within GFF1403 at 265.243 kb on + strand, within GFF1403 at 265.243 kb on + strand, within GFF1403 at 265.244 kb on - strand, within GFF1403 at 265.244 kb on - strand, within GFF1403 at 265.244 kb on - strand, within GFF1403 at 265.244 kb on - strand, within GFF1403 at 265.484 kb on - strand, within GFF1403 at 265.585 kb on + strand, within GFF1403 at 265.586 kb on - strand, within GFF1403 at 266.107 kb on + strand at 266.108 kb on - strand at 266.210 kb on + strand at 266.210 kb on + strand at 266.210 kb on + strand at 266.211 kb on - strand at 266.211 kb on - strand at 266.211 kb on - strand at 266.450 kb on + strand, within GFF1404 at 266.450 kb on + strand, within GFF1404 at 266.474 kb on + strand, within GFF1404 at 266.621 kb on + strand, within GFF1404 at 266.622 kb on - strand, within GFF1404 at 266.622 kb on - strand, within GFF1404 at 266.678 kb on + strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.717 kb on + strand, within GFF1404 at 266.717 kb on + strand, within GFF1404 at 266.718 kb on - strand, within GFF1404 at 266.978 kb on + strand, within GFF1404 at 267.359 kb on + strand at 267.359 kb on + strand at 267.519 kb on + strand at 267.525 kb on + strand at 267.526 kb on - strand at 267.526 kb on - strand at 267.530 kb on - strand at 267.530 kb on - strand at 267.602 kb on - strand at 267.763 kb on + strand, within GFF1406 at 267.763 kb on + strand, within GFF1406 at 267.790 kb on + strand, within GFF1406 at 268.087 kb on + strand, within GFF1406 at 268.087 kb on + strand, within GFF1406
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 265,243 + GFF1403 0.24 +0.2 265,243 + GFF1403 0.24 -1.4 265,243 + GFF1403 0.24 -2.0 265,243 + GFF1403 0.24 -0.1 265,244 - GFF1403 0.24 -0.1 265,244 - GFF1403 0.24 +0.1 265,244 - GFF1403 0.24 -0.0 265,244 - GFF1403 0.24 +0.2 265,484 - GFF1403 0.44 +0.2 265,585 + GFF1403 0.53 +0.0 265,586 - GFF1403 0.53 -0.5 266,107 + +1.3 266,108 - -0.3 266,210 + +0.9 266,210 + -0.1 266,210 + -0.6 266,211 - -0.1 266,211 - +1.0 266,211 - +0.3 266,450 + GFF1404 0.23 +0.1 266,450 + GFF1404 0.23 +0.3 266,474 + GFF1404 0.25 -0.8 266,621 + GFF1404 0.37 +0.3 266,622 - GFF1404 0.37 +0.5 266,622 - GFF1404 0.37 +0.3 266,678 + GFF1404 0.42 +0.2 266,679 - GFF1404 0.42 +0.8 266,679 - GFF1404 0.42 +0.1 266,679 - GFF1404 0.42 +0.4 266,679 - GFF1404 0.42 -0.4 266,679 - GFF1404 0.42 -1.0 266,717 + GFF1404 0.45 -0.0 266,717 + GFF1404 0.45 +0.6 266,718 - GFF1404 0.45 -0.2 266,978 + GFF1404 0.67 -0.7 267,359 + -0.0 267,359 + -0.7 267,519 + +0.2 267,525 + +0.5 267,526 - -0.7 267,526 - +0.8 267,530 - +0.6 267,530 - +0.1 267,602 - -0.4 267,763 + GFF1406 0.12 -1.6 267,763 + GFF1406 0.12 -0.0 267,790 + GFF1406 0.14 +1.0 268,087 + GFF1406 0.29 -1.4 268,087 + GFF1406 0.29 -0.5
Or see this region's nucleotide sequence