Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1393

Experiment: Ying_OrganicAcid7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1392 and GFF1393 are separated by 2 nucleotidesGFF1393 and GFF1394 are separated by 87 nucleotides GFF1392 - General secretion pathway protein F / Type II secretory pathway, component PulF, at 247,562 to 248,791 GFF1392 GFF1393 - 5'-nucleotidase (EC 3.1.3.5), at 248,794 to 249,693 GFF1393 GFF1394 - ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27), at 249,781 to 251,574 GFF1394 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 247.970 kb on + strand, within GFF1392at 247.970 kb on + strand, within GFF1392at 247.970 kb on + strand, within GFF1392at 247.970 kb on + strand, within GFF1392at 247.970 kb on + strand, within GFF1392at 247.971 kb on - strand, within GFF1392at 247.971 kb on - strand, within GFF1392at 248.091 kb on - strand, within GFF1392at 248.144 kb on + strand, within GFF1392at 248.144 kb on + strand, within GFF1392at 248.144 kb on + strand, within GFF1392at 248.144 kb on + strand, within GFF1392at 248.144 kb on + strand, within GFF1392at 248.145 kb on - strand, within GFF1392at 248.145 kb on - strand, within GFF1392at 248.145 kb on - strand, within GFF1392at 248.244 kb on - strand, within GFF1392at 248.244 kb on - strand, within GFF1392at 248.244 kb on - strand, within GFF1392at 248.244 kb on - strand, within GFF1392at 248.378 kb on + strand, within GFF1392at 248.379 kb on - strand, within GFF1392at 248.899 kb on + strand, within GFF1393at 248.899 kb on + strand, within GFF1393at 248.899 kb on + strand, within GFF1393at 248.900 kb on - strand, within GFF1393at 248.900 kb on - strand, within GFF1393at 248.900 kb on - strand, within GFF1393at 248.900 kb on - strand, within GFF1393at 248.900 kb on - strand, within GFF1393at 248.900 kb on - strand, within GFF1393at 248.900 kb on - strand, within GFF1393at 249.073 kb on + strand, within GFF1393at 249.074 kb on - strand, within GFF1393at 249.074 kb on - strand, within GFF1393at 249.127 kb on + strand, within GFF1393at 249.220 kb on + strand, within GFF1393at 249.220 kb on + strand, within GFF1393at 249.221 kb on - strand, within GFF1393at 249.221 kb on - strand, within GFF1393at 249.692 kb on - strandat 249.859 kb on + strandat 249.860 kb on - strandat 249.934 kb on + strandat 249.934 kb on + strandat 249.935 kb on - strandat 249.935 kb on - strandat 249.935 kb on - strandat 249.935 kb on - strandat 249.973 kb on + strand, within GFF1394at 249.973 kb on + strand, within GFF1394at 250.048 kb on + strand, within GFF1394at 250.048 kb on + strand, within GFF1394at 250.049 kb on - strand, within GFF1394at 250.049 kb on - strand, within GFF1394at 250.049 kb on - strand, within GFF1394at 250.066 kb on + strand, within GFF1394at 250.066 kb on + strand, within GFF1394at 250.067 kb on - strand, within GFF1394at 250.075 kb on + strand, within GFF1394at 250.075 kb on + strand, within GFF1394at 250.126 kb on + strand, within GFF1394at 250.126 kb on + strand, within GFF1394at 250.126 kb on + strand, within GFF1394at 250.126 kb on + strand, within GFF1394at 250.127 kb on - strand, within GFF1394at 250.127 kb on - strand, within GFF1394at 250.127 kb on - strand, within GFF1394at 250.127 kb on - strand, within GFF1394at 250.159 kb on + strand, within GFF1394at 250.255 kb on + strand, within GFF1394at 250.256 kb on - strand, within GFF1394at 250.256 kb on - strand, within GFF1394at 250.396 kb on + strand, within GFF1394at 250.397 kb on - strand, within GFF1394at 250.397 kb on - strand, within GFF1394at 250.420 kb on + strand, within GFF1394at 250.621 kb on + strand, within GFF1394at 250.621 kb on + strand, within GFF1394at 250.622 kb on - strand, within GFF1394at 250.622 kb on - strand, within GFF1394

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3
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247,970 + GFF1392 0.33 +0.3
247,970 + GFF1392 0.33 -0.7
247,970 + GFF1392 0.33 -0.7
247,970 + GFF1392 0.33 -0.7
247,970 + GFF1392 0.33 -0.6
247,971 - GFF1392 0.33 -1.0
247,971 - GFF1392 0.33 -0.8
248,091 - GFF1392 0.43 -0.1
248,144 + GFF1392 0.47 +0.3
248,144 + GFF1392 0.47 -0.2
248,144 + GFF1392 0.47 -0.4
248,144 + GFF1392 0.47 +0.0
248,144 + GFF1392 0.47 +0.3
248,145 - GFF1392 0.47 -1.2
248,145 - GFF1392 0.47 +0.3
248,145 - GFF1392 0.47 -0.1
248,244 - GFF1392 0.55 -1.5
248,244 - GFF1392 0.55 -0.8
248,244 - GFF1392 0.55 -1.0
248,244 - GFF1392 0.55 -1.0
248,378 + GFF1392 0.66 -0.1
248,379 - GFF1392 0.66 -0.5
248,899 + GFF1393 0.12 +0.8
248,899 + GFF1393 0.12 +1.5
248,899 + GFF1393 0.12 -0.5
248,900 - GFF1393 0.12 -0.8
248,900 - GFF1393 0.12 -0.1
248,900 - GFF1393 0.12 -0.3
248,900 - GFF1393 0.12 -0.0
248,900 - GFF1393 0.12 -1.0
248,900 - GFF1393 0.12 -0.8
248,900 - GFF1393 0.12 -2.2
249,073 + GFF1393 0.31 -0.2
249,074 - GFF1393 0.31 +0.1
249,074 - GFF1393 0.31 +0.3
249,127 + GFF1393 0.37 -0.7
249,220 + GFF1393 0.47 -0.1
249,220 + GFF1393 0.47 -0.7
249,221 - GFF1393 0.47 +0.7
249,221 - GFF1393 0.47 +0.3
249,692 - -0.0
249,859 + +0.0
249,860 - -0.2
249,934 + +0.5
249,934 + -0.7
249,935 - +0.5
249,935 - -0.4
249,935 - +0.5
249,935 - -0.6
249,973 + GFF1394 0.11 -0.7
249,973 + GFF1394 0.11 +1.1
250,048 + GFF1394 0.15 +0.2
250,048 + GFF1394 0.15 -0.2
250,049 - GFF1394 0.15 +0.1
250,049 - GFF1394 0.15 -0.3
250,049 - GFF1394 0.15 +0.0
250,066 + GFF1394 0.16 +0.4
250,066 + GFF1394 0.16 -0.1
250,067 - GFF1394 0.16 +0.3
250,075 + GFF1394 0.16 +0.9
250,075 + GFF1394 0.16 +0.1
250,126 + GFF1394 0.19 +0.6
250,126 + GFF1394 0.19 +0.7
250,126 + GFF1394 0.19 -0.1
250,126 + GFF1394 0.19 -0.1
250,127 - GFF1394 0.19 +0.2
250,127 - GFF1394 0.19 -0.5
250,127 - GFF1394 0.19 -0.5
250,127 - GFF1394 0.19 +0.7
250,159 + GFF1394 0.21 +0.3
250,255 + GFF1394 0.26 -0.4
250,256 - GFF1394 0.26 +1.9
250,256 - GFF1394 0.26 +0.2
250,396 + GFF1394 0.34 +0.8
250,397 - GFF1394 0.34 +0.8
250,397 - GFF1394 0.34 +0.5
250,420 + GFF1394 0.36 +0.1
250,621 + GFF1394 0.47 +0.8
250,621 + GFF1394 0.47 +0.8
250,622 - GFF1394 0.47 -0.3
250,622 - GFF1394 0.47 +0.1

Or see this region's nucleotide sequence