Experiment: Ying_OrganicAcid7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1184 and GFF1185 are separated by 0 nucleotides GFF1185 and GFF1186 overlap by 4 nucleotides GFF1186 and GFF1187 are separated by 12 nucleotides GFF1187 and GFF1188 overlap by 4 nucleotides
GFF1184 - hypothetical protein, at 43,096 to 44,622
GFF1184
GFF1185 - Heme oxygenase HemO, associated with heme uptake, at 44,623 to 45,267
GFF1185
GFF1186 - General secretion pathway protein N, at 45,264 to 46,040
GFF1186
GFF1187 - Hypothetical protein DUF454, at 46,053 to 46,442
GFF1187
GFF1188 - Formate dehydrogenase chain D (EC 1.2.1.2), at 46,439 to 47,293
GFF1188
Position (kb) 45
46
47 Strain fitness (log2 ratio) -1
0
1 at 44.428 kb on + strand, within GFF1184 at 44.776 kb on + strand, within GFF1185 at 44.800 kb on + strand, within GFF1185 at 44.800 kb on + strand, within GFF1185 at 44.801 kb on - strand, within GFF1185 at 44.831 kb on - strand, within GFF1185 at 44.831 kb on - strand, within GFF1185 at 45.001 kb on + strand, within GFF1185 at 45.819 kb on + strand, within GFF1186 at 45.820 kb on - strand, within GFF1186 at 45.820 kb on - strand, within GFF1186 at 45.820 kb on - strand, within GFF1186 at 46.440 kb on + strand at 46.441 kb on - strand at 46.441 kb on - strand at 46.512 kb on + strand at 46.513 kb on - strand at 46.513 kb on - strand at 46.513 kb on - strand at 46.591 kb on + strand, within GFF1188 at 46.592 kb on - strand, within GFF1188 at 46.675 kb on - strand, within GFF1188 at 46.732 kb on + strand, within GFF1188 at 46.733 kb on - strand, within GFF1188 at 46.789 kb on - strand, within GFF1188 at 46.789 kb on - strand, within GFF1188 at 46.827 kb on + strand, within GFF1188 at 46.827 kb on + strand, within GFF1188 at 46.827 kb on + strand, within GFF1188 at 46.827 kb on + strand, within GFF1188 at 46.828 kb on - strand, within GFF1188 at 46.828 kb on - strand, within GFF1188 at 46.828 kb on - strand, within GFF1188 at 46.828 kb on - strand, within GFF1188 at 46.866 kb on + strand, within GFF1188 at 46.866 kb on + strand, within GFF1188 at 46.866 kb on + strand, within GFF1188 at 46.866 kb on + strand, within GFF1188 at 46.867 kb on - strand, within GFF1188 at 46.867 kb on - strand, within GFF1188 at 46.867 kb on - strand, within GFF1188 at 46.867 kb on - strand, within GFF1188 at 46.867 kb on - strand, within GFF1188 at 46.867 kb on - strand, within GFF1188
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 3 remove 44,428 + GFF1184 0.87 +0.4 44,776 + GFF1185 0.24 +0.6 44,800 + GFF1185 0.27 -0.7 44,800 + GFF1185 0.27 +0.4 44,801 - GFF1185 0.28 -0.3 44,831 - GFF1185 0.32 -0.1 44,831 - GFF1185 0.32 -0.4 45,001 + GFF1185 0.59 -0.6 45,819 + GFF1186 0.71 -0.7 45,820 - GFF1186 0.72 +0.7 45,820 - GFF1186 0.72 -0.4 45,820 - GFF1186 0.72 -1.3 46,440 + +0.0 46,441 - -0.5 46,441 - +0.1 46,512 + -0.9 46,513 - -0.1 46,513 - +0.1 46,513 - -0.3 46,591 + GFF1188 0.18 -0.8 46,592 - GFF1188 0.18 +0.5 46,675 - GFF1188 0.28 -0.5 46,732 + GFF1188 0.34 -0.4 46,733 - GFF1188 0.34 -0.5 46,789 - GFF1188 0.41 -0.1 46,789 - GFF1188 0.41 -0.8 46,827 + GFF1188 0.45 -0.5 46,827 + GFF1188 0.45 -1.5 46,827 + GFF1188 0.45 -0.4 46,827 + GFF1188 0.45 -0.9 46,828 - GFF1188 0.45 +0.4 46,828 - GFF1188 0.45 +0.0 46,828 - GFF1188 0.45 -1.0 46,828 - GFF1188 0.45 -0.5 46,866 + GFF1188 0.50 -0.8 46,866 + GFF1188 0.50 -0.0 46,866 + GFF1188 0.50 -0.2 46,866 + GFF1188 0.50 +0.3 46,867 - GFF1188 0.50 +0.1 46,867 - GFF1188 0.50 +1.3 46,867 - GFF1188 0.50 +0.5 46,867 - GFF1188 0.50 +0.0 46,867 - GFF1188 0.50 +0.3 46,867 - GFF1188 0.50 +0.9
Or see this region's nucleotide sequence