Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF989 and GFF990 overlap by 4 nucleotides GFF990 and GFF991 overlap by 4 nucleotides GFF991 and GFF992 are separated by 24 nucleotides GFF992 and GFF993 are separated by 13 nucleotides GFF993 and GFF994 overlap by 4 nucleotides
GFF989 - metallo-beta-lactamase family protein, at 729,259 to 730,326
GFF989
GFF990 - Phenylacetic acid degradation-related protein, at 730,323 to 730,799
GFF990
GFF991 - hypothetical protein, at 730,796 to 731,230
GFF991
GFF992 - Citronellol and citronellal dehydrogenase, at 731,255 to 732,136
GFF992
GFF993 - Transglutaminase-like domain, at 732,150 to 732,845
GFF993
GFF994 - probable hydrolase, at 732,842 to 733,708
GFF994
Position (kb) 731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 730.396 kb on - strand, within GFF990 at 730.573 kb on + strand, within GFF990 at 730.609 kb on - strand, within GFF990 at 730.660 kb on - strand, within GFF990 at 730.701 kb on + strand, within GFF990 at 730.746 kb on + strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.755 kb on - strand at 730.772 kb on - strand at 731.019 kb on - strand, within GFF991 at 731.079 kb on - strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.109 kb on - strand, within GFF991 at 731.266 kb on + strand at 731.266 kb on + strand at 731.267 kb on - strand at 731.374 kb on - strand, within GFF992 at 731.866 kb on + strand, within GFF992 at 731.866 kb on - strand, within GFF992 at 731.870 kb on + strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 731.871 kb on - strand, within GFF992 at 732.149 kb on + strand at 732.297 kb on + strand, within GFF993 at 732.300 kb on + strand, within GFF993 at 732.325 kb on - strand, within GFF993 at 732.513 kb on + strand, within GFF993 at 732.699 kb on + strand, within GFF993 at 732.699 kb on + strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993 at 732.700 kb on - strand, within GFF993
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 730,396 - GFF990 0.15 -0.4 730,573 + GFF990 0.52 -0.4 730,609 - GFF990 0.60 +0.6 730,660 - GFF990 0.71 -2.8 730,701 + GFF990 0.79 +0.4 730,746 + GFF990 0.89 -0.5 730,747 - GFF990 0.89 +0.8 730,747 - GFF990 0.89 -1.2 730,747 - GFF990 0.89 -0.8 730,747 - GFF990 0.89 +0.1 730,755 - +0.6 730,772 - +0.2 731,019 - GFF991 0.51 -3.7 731,079 - GFF991 0.65 -0.4 731,108 + GFF991 0.72 -0.6 731,108 + GFF991 0.72 +0.0 731,108 + GFF991 0.72 +0.9 731,109 - GFF991 0.72 +1.0 731,266 + -0.3 731,266 + +0.0 731,267 - +1.5 731,374 - GFF992 0.13 +0.6 731,866 + GFF992 0.69 -0.4 731,866 - GFF992 0.69 +0.8 731,870 + GFF992 0.70 +0.1 731,871 - GFF992 0.70 -0.2 731,871 - GFF992 0.70 -0.2 731,871 - GFF992 0.70 +0.2 732,149 + +0.3 732,297 + GFF993 0.21 -0.3 732,300 + GFF993 0.22 +0.4 732,325 - GFF993 0.25 -0.8 732,513 + GFF993 0.52 +0.8 732,699 + GFF993 0.79 -0.1 732,699 + GFF993 0.79 +0.9 732,700 - GFF993 0.79 -0.2 732,700 - GFF993 0.79 -0.4 732,700 - GFF993 0.79 -1.7 732,700 - GFF993 0.79 -1.2 732,700 - GFF993 0.79 -0.4
Or see this region's nucleotide sequence