Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF866 and GFF867 are separated by 31 nucleotides GFF867 and GFF868 are separated by 239 nucleotides GFF868 and GFF869 are separated by 313 nucleotides
GFF866 - 3-hydroxy-3isohexenylglutaryl-CoA:acetate lyase, at 586,862 to 588,643
GFF866
GFF867 - hypothetical protein, at 588,675 to 588,965
GFF867
GFF868 - Metallo-beta-lactamase family protein, at 589,205 to 590,569
GFF868
GFF869 - carbon monoxide dehydrogenase E protein, at 590,883 to 592,337
GFF869
Position (kb) 589
590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 588.469 kb on - strand at 588.532 kb on - strand at 588.532 kb on - strand at 588.532 kb on - strand at 588.622 kb on + strand at 588.622 kb on + strand at 588.623 kb on - strand at 588.695 kb on + strand at 588.695 kb on + strand at 588.722 kb on + strand, within GFF867 at 588.723 kb on - strand, within GFF867 at 588.828 kb on - strand, within GFF867 at 588.828 kb on - strand, within GFF867 at 588.965 kb on + strand at 588.965 kb on + strand at 588.965 kb on + strand at 588.965 kb on + strand at 588.966 kb on - strand at 588.967 kb on + strand at 588.967 kb on + strand at 588.967 kb on + strand at 588.967 kb on - strand at 588.968 kb on - strand at 588.968 kb on - strand at 589.034 kb on + strand at 589.035 kb on - strand at 589.044 kb on + strand at 589.044 kb on + strand at 589.166 kb on + strand at 589.166 kb on + strand at 589.166 kb on + strand at 589.167 kb on - strand at 589.167 kb on - strand at 589.167 kb on - strand at 589.197 kb on + strand at 589.293 kb on + strand at 589.304 kb on + strand at 589.304 kb on + strand at 589.497 kb on + strand, within GFF868 at 589.498 kb on - strand, within GFF868 at 589.537 kb on + strand, within GFF868 at 589.537 kb on + strand, within GFF868 at 589.538 kb on - strand, within GFF868 at 589.624 kb on + strand, within GFF868 at 589.625 kb on - strand, within GFF868 at 589.762 kb on + strand, within GFF868 at 589.763 kb on - strand, within GFF868 at 589.763 kb on - strand, within GFF868 at 589.924 kb on - strand, within GFF868 at 589.950 kb on + strand, within GFF868 at 589.950 kb on + strand, within GFF868 at 589.950 kb on + strand, within GFF868 at 589.951 kb on - strand, within GFF868 at 589.951 kb on - strand, within GFF868 at 590.185 kb on + strand, within GFF868 at 590.485 kb on - strand at 590.647 kb on + strand at 590.647 kb on + strand at 590.647 kb on + strand at 590.648 kb on - strand at 590.695 kb on - strand at 591.061 kb on + strand, within GFF869 at 591.062 kb on - strand, within GFF869 at 591.191 kb on - strand, within GFF869 at 591.361 kb on + strand, within GFF869 at 591.447 kb on + strand, within GFF869 at 591.447 kb on + strand, within GFF869 at 591.457 kb on + strand, within GFF869
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 588,469 - -0.8 588,532 - -0.6 588,532 - +0.4 588,532 - -0.1 588,622 + -0.4 588,622 + -1.4 588,623 - -1.1 588,695 + +0.5 588,695 + +0.4 588,722 + GFF867 0.16 +0.2 588,723 - GFF867 0.16 +0.3 588,828 - GFF867 0.53 -0.1 588,828 - GFF867 0.53 +0.8 588,965 + -0.6 588,965 + +0.2 588,965 + +0.1 588,965 + -0.3 588,966 - -0.8 588,967 + -0.8 588,967 + +0.6 588,967 + -0.4 588,967 - -0.2 588,968 - -0.8 588,968 - -0.1 589,034 + -1.4 589,035 - -0.2 589,044 + -0.6 589,044 + -1.8 589,166 + -0.2 589,166 + -0.1 589,166 + -1.2 589,167 - +0.9 589,167 - +0.7 589,167 - +1.2 589,197 + +0.9 589,293 + -0.4 589,304 + +0.2 589,304 + +0.3 589,497 + GFF868 0.21 +1.5 589,498 - GFF868 0.21 -0.1 589,537 + GFF868 0.24 -0.4 589,537 + GFF868 0.24 +0.6 589,538 - GFF868 0.24 -0.6 589,624 + GFF868 0.31 -0.2 589,625 - GFF868 0.31 +0.1 589,762 + GFF868 0.41 -0.6 589,763 - GFF868 0.41 -1.1 589,763 - GFF868 0.41 +0.1 589,924 - GFF868 0.53 +0.1 589,950 + GFF868 0.55 +0.4 589,950 + GFF868 0.55 -0.4 589,950 + GFF868 0.55 -1.2 589,951 - GFF868 0.55 +0.4 589,951 - GFF868 0.55 -0.4 590,185 + GFF868 0.72 -0.9 590,485 - +0.7 590,647 + -0.0 590,647 + +0.3 590,647 + -0.2 590,648 - -1.0 590,695 - -4.2 591,061 + GFF869 0.12 +0.6 591,062 - GFF869 0.12 +0.7 591,191 - GFF869 0.21 -0.1 591,361 + GFF869 0.33 -0.5 591,447 + GFF869 0.39 -0.2 591,447 + GFF869 0.39 +0.3 591,457 + GFF869 0.39 +0.3
Or see this region's nucleotide sequence