Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF815 and GFF816 are separated by 18 nucleotides GFF816 and GFF817 are separated by 20 nucleotides GFF817 and GFF818 are separated by 36 nucleotides
GFF815 - FIG015547: peptidase, M16 family, at 509,460 to 510,911
GFF815
GFF816 - FIG015287: Zinc protease, at 510,930 to 512,267
GFF816
GFF817 - Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-), at 512,288 to 512,902
GFF817
GFF818 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 512,939 to 513,457
GFF818
Position (kb) 510
511
512
513 Strain fitness (log2 ratio) -2
-1
0
1
2 at 510.012 kb on + strand, within GFF815 at 510.012 kb on + strand, within GFF815 at 510.012 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.108 kb on + strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.109 kb on - strand, within GFF815 at 510.306 kb on + strand, within GFF815 at 510.307 kb on - strand, within GFF815 at 510.400 kb on - strand, within GFF815 at 510.483 kb on + strand, within GFF815 at 510.484 kb on - strand, within GFF815 at 510.660 kb on + strand, within GFF815 at 510.661 kb on - strand, within GFF815 at 510.661 kb on - strand, within GFF815 at 510.661 kb on - strand, within GFF815 at 510.661 kb on - strand, within GFF815 at 510.705 kb on + strand, within GFF815 at 510.802 kb on - strand at 510.802 kb on - strand at 511.473 kb on + strand, within GFF816 at 511.473 kb on + strand, within GFF816 at 511.488 kb on + strand, within GFF816 at 511.488 kb on + strand, within GFF816 at 511.488 kb on + strand, within GFF816 at 511.489 kb on - strand, within GFF816 at 511.489 kb on - strand, within GFF816 at 511.489 kb on - strand, within GFF816 at 511.495 kb on - strand, within GFF816 at 511.552 kb on - strand, within GFF816 at 511.552 kb on - strand, within GFF816 at 511.806 kb on + strand, within GFF816 at 511.806 kb on + strand, within GFF816 at 511.806 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.818 kb on + strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.819 kb on - strand, within GFF816 at 511.887 kb on + strand, within GFF816 at 511.887 kb on + strand, within GFF816 at 511.888 kb on - strand, within GFF816 at 511.888 kb on - strand, within GFF816 at 511.902 kb on + strand, within GFF816 at 511.903 kb on - strand, within GFF816 at 512.056 kb on - strand, within GFF816 at 512.148 kb on + strand at 512.275 kb on + strand at 512.275 kb on + strand at 512.276 kb on - strand at 512.276 kb on - strand at 512.682 kb on + strand, within GFF817 at 512.683 kb on - strand, within GFF817 at 512.683 kb on - strand, within GFF817 at 512.726 kb on + strand, within GFF817 at 512.726 kb on + strand, within GFF817 at 512.726 kb on + strand, within GFF817 at 512.727 kb on - strand, within GFF817 at 512.780 kb on + strand, within GFF817 at 512.781 kb on - strand, within GFF817 at 512.928 kb on + strand at 512.928 kb on + strand at 512.928 kb on + strand at 512.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 510,012 + GFF815 0.38 +0.5 510,012 + GFF815 0.38 +1.0 510,012 + GFF815 0.38 +0.8 510,108 + GFF815 0.45 -0.0 510,108 + GFF815 0.45 +0.1 510,108 + GFF815 0.45 +0.5 510,108 + GFF815 0.45 -0.6 510,109 - GFF815 0.45 -0.3 510,109 - GFF815 0.45 -0.9 510,109 - GFF815 0.45 +0.8 510,109 - GFF815 0.45 -1.1 510,109 - GFF815 0.45 -0.3 510,109 - GFF815 0.45 -0.6 510,306 + GFF815 0.58 +0.6 510,307 - GFF815 0.58 -2.1 510,400 - GFF815 0.65 -0.3 510,483 + GFF815 0.70 -0.9 510,484 - GFF815 0.71 -0.2 510,660 + GFF815 0.83 +0.1 510,661 - GFF815 0.83 +0.4 510,661 - GFF815 0.83 +0.5 510,661 - GFF815 0.83 +0.6 510,661 - GFF815 0.83 +0.9 510,705 + GFF815 0.86 -0.2 510,802 - -1.3 510,802 - +0.3 511,473 + GFF816 0.41 +0.1 511,473 + GFF816 0.41 -0.6 511,488 + GFF816 0.42 +0.8 511,488 + GFF816 0.42 +0.7 511,488 + GFF816 0.42 +2.3 511,489 - GFF816 0.42 -0.1 511,489 - GFF816 0.42 -0.0 511,489 - GFF816 0.42 +0.1 511,495 - GFF816 0.42 +0.0 511,552 - GFF816 0.46 +0.4 511,552 - GFF816 0.46 -0.7 511,806 + GFF816 0.65 +0.1 511,806 + GFF816 0.65 +0.7 511,806 + GFF816 0.65 -0.3 511,818 + GFF816 0.66 -0.6 511,818 + GFF816 0.66 -0.3 511,818 + GFF816 0.66 -0.2 511,818 + GFF816 0.66 -0.3 511,818 + GFF816 0.66 +0.5 511,818 + GFF816 0.66 -0.5 511,818 + GFF816 0.66 +0.3 511,819 - GFF816 0.66 +1.3 511,819 - GFF816 0.66 +0.5 511,819 - GFF816 0.66 +0.6 511,819 - GFF816 0.66 -0.6 511,819 - GFF816 0.66 +0.3 511,819 - GFF816 0.66 -0.2 511,887 + GFF816 0.72 +1.3 511,887 + GFF816 0.72 -0.2 511,888 - GFF816 0.72 -0.0 511,888 - GFF816 0.72 +0.7 511,902 + GFF816 0.73 +1.3 511,903 - GFF816 0.73 -1.6 512,056 - GFF816 0.84 +1.0 512,148 + +0.6 512,275 + -0.1 512,275 + +1.7 512,276 - -0.7 512,276 - -0.9 512,682 + GFF817 0.64 -0.9 512,683 - GFF817 0.64 +0.5 512,683 - GFF817 0.64 -0.3 512,726 + GFF817 0.71 -0.3 512,726 + GFF817 0.71 +0.3 512,726 + GFF817 0.71 -1.1 512,727 - GFF817 0.71 -0.2 512,780 + GFF817 0.80 -0.6 512,781 - GFF817 0.80 -0.7 512,928 + +0.8 512,928 + -1.1 512,928 + -0.3 512,933 + -0.5
Or see this region's nucleotide sequence