Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF754 and GFF755 are separated by 0 nucleotides GFF755 and GFF756 are separated by 119 nucleotides
GFF754 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 443,605 to 445,533
GFF754
GFF755 - Permease of the drug/metabolite transporter (DMT) superfamily, at 445,534 to 446,475
GFF755
GFF756 - Quinone oxidoreductase (EC 1.6.5.5), at 446,595 to 447,590
GFF756
Position (kb) 445
446
447 Strain fitness (log2 ratio) -2
-1
0
1
2 at 445.535 kb on + strand at 445.536 kb on - strand at 445.536 kb on - strand at 445.536 kb on - strand at 445.716 kb on - strand, within GFF755 at 445.716 kb on - strand, within GFF755 at 445.745 kb on + strand, within GFF755 at 445.745 kb on + strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.746 kb on - strand, within GFF755 at 445.949 kb on + strand, within GFF755 at 445.950 kb on - strand, within GFF755 at 446.108 kb on + strand, within GFF755 at 446.198 kb on + strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.199 kb on - strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.213 kb on + strand, within GFF755 at 446.214 kb on - strand, within GFF755 at 446.214 kb on - strand, within GFF755 at 446.488 kb on - strand at 446.743 kb on - strand, within GFF756 at 446.743 kb on - strand, within GFF756 at 446.743 kb on - strand, within GFF756 at 446.761 kb on - strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.886 kb on + strand, within GFF756 at 446.887 kb on - strand, within GFF756 at 446.887 kb on - strand, within GFF756 at 447.186 kb on + strand, within GFF756 at 447.186 kb on + strand, within GFF756 at 447.252 kb on + strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.253 kb on - strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.390 kb on + strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756 at 447.391 kb on - strand, within GFF756
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 445,535 + -0.2 445,536 - -0.7 445,536 - +1.1 445,536 - -0.1 445,716 - GFF755 0.19 -2.7 445,716 - GFF755 0.19 +0.5 445,745 + GFF755 0.22 +0.1 445,745 + GFF755 0.22 -1.1 445,746 - GFF755 0.23 -0.0 445,746 - GFF755 0.23 +0.7 445,746 - GFF755 0.23 +0.6 445,746 - GFF755 0.23 +0.0 445,949 + GFF755 0.44 -0.1 445,950 - GFF755 0.44 -0.5 446,108 + GFF755 0.61 +1.3 446,198 + GFF755 0.70 -0.0 446,199 - GFF755 0.71 -0.2 446,199 - GFF755 0.71 +0.3 446,199 - GFF755 0.71 -0.0 446,213 + GFF755 0.72 +0.1 446,213 + GFF755 0.72 -0.5 446,213 + GFF755 0.72 -0.4 446,214 - GFF755 0.72 +0.3 446,214 - GFF755 0.72 +0.5 446,488 - -0.0 446,743 - GFF756 0.15 -0.7 446,743 - GFF756 0.15 -0.4 446,743 - GFF756 0.15 -2.1 446,761 - GFF756 0.17 +0.0 446,886 + GFF756 0.29 +1.1 446,886 + GFF756 0.29 -0.4 446,886 + GFF756 0.29 -0.9 446,886 + GFF756 0.29 -0.1 446,886 + GFF756 0.29 +0.1 446,886 + GFF756 0.29 -0.5 446,886 + GFF756 0.29 -1.5 446,887 - GFF756 0.29 +0.5 446,887 - GFF756 0.29 -0.3 447,186 + GFF756 0.59 +2.0 447,186 + GFF756 0.59 +0.3 447,252 + GFF756 0.66 +0.5 447,253 - GFF756 0.66 -0.7 447,253 - GFF756 0.66 -0.0 447,253 - GFF756 0.66 -0.3 447,390 + GFF756 0.80 +1.3 447,390 + GFF756 0.80 -0.5 447,390 + GFF756 0.80 -1.5 447,390 + GFF756 0.80 +0.1 447,390 + GFF756 0.80 -1.0 447,391 - GFF756 0.80 +0.2 447,391 - GFF756 0.80 +0.3 447,391 - GFF756 0.80 +0.1 447,391 - GFF756 0.80 -0.6
Or see this region's nucleotide sequence