Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF724 and GFF725 are separated by 120 nucleotides GFF725 and GFF726 are separated by 9 nucleotides GFF726 and GFF727 are separated by 89 nucleotides
GFF724 - Ornithine cyclodeaminase (EC 4.3.1.12), at 404,152 to 405,231
GFF724
GFF725 - Transcriptional regulator, AsnC family, at 405,352 to 405,777
GFF725
GFF726 - Enoyl-CoA hydratase (EC 4.2.1.17), at 405,787 to 406,629
GFF726
GFF727 - hypothetical protein, at 406,719 to 406,997
GFF727
Position (kb) 405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 404.996 kb on + strand, within GFF724 at 404.996 kb on + strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 405.008 kb on + strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.105 kb on - strand, within GFF724 at 405.280 kb on + strand at 405.280 kb on + strand at 405.763 kb on + strand at 405.764 kb on - strand at 405.775 kb on + strand at 406.075 kb on + strand, within GFF726 at 406.075 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.076 kb on + strand, within GFF726 at 406.077 kb on - strand, within GFF726 at 406.077 kb on - strand, within GFF726 at 406.364 kb on + strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.365 kb on - strand, within GFF726 at 406.670 kb on + strand at 406.671 kb on - strand at 406.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 404,996 + GFF724 0.78 -0.3 404,996 + GFF724 0.78 -1.4 404,997 - GFF724 0.78 -2.2 404,997 - GFF724 0.78 -2.1 404,997 - GFF724 0.78 -2.3 404,997 - GFF724 0.78 -1.4 404,997 - GFF724 0.78 -3.2 405,008 + GFF724 0.79 -1.0 405,009 - GFF724 0.79 -0.3 405,009 - GFF724 0.79 -3.0 405,105 - GFF724 0.88 -1.2 405,280 + -2.2 405,280 + -2.2 405,763 + -1.0 405,764 - -1.0 405,775 + +0.3 406,075 + GFF726 0.34 -0.1 406,075 + GFF726 0.34 +0.0 406,076 + GFF726 0.34 +0.5 406,076 + GFF726 0.34 +1.2 406,076 + GFF726 0.34 -0.3 406,077 - GFF726 0.34 +1.3 406,077 - GFF726 0.34 -0.5 406,364 + GFF726 0.68 -0.4 406,365 - GFF726 0.69 +0.3 406,365 - GFF726 0.69 +0.5 406,365 - GFF726 0.69 -0.6 406,670 + +1.7 406,671 - +1.0 406,726 + -0.0
Or see this region's nucleotide sequence