Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF707 and GFF708 are separated by 83 nucleotides GFF708 and GFF1076 are separated by 56 nucleotides GFF1076 and GFF709 are separated by 39 nucleotides
GFF707 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 386,567 to 387,601
GFF707
GFF708 - Nucleoside-diphosphate-sugar epimerases, at 387,685 to 388,602
GFF708
GFF1076 - tRNA-Leu-CAA, at 388,659 to 388,740
GFF1076
GFF709 - Cysteine synthase B (EC 2.5.1.47), at 388,780 to 389,682
GFF709
Position (kb) 387
388
389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 386.688 kb on + strand, within GFF707 at 386.688 kb on + strand, within GFF707 at 386.688 kb on + strand, within GFF707 at 386.688 kb on + strand, within GFF707 at 386.688 kb on + strand, within GFF707 at 386.689 kb on - strand, within GFF707 at 386.689 kb on - strand, within GFF707 at 386.689 kb on - strand, within GFF707 at 386.689 kb on - strand, within GFF707 at 386.689 kb on - strand, within GFF707 at 386.799 kb on + strand, within GFF707 at 386.800 kb on - strand, within GFF707 at 386.800 kb on - strand, within GFF707 at 386.850 kb on + strand, within GFF707 at 386.850 kb on + strand, within GFF707 at 386.850 kb on + strand, within GFF707 at 386.851 kb on - strand, within GFF707 at 386.880 kb on + strand, within GFF707 at 387.012 kb on + strand, within GFF707 at 387.012 kb on + strand, within GFF707 at 387.153 kb on + strand, within GFF707 at 387.153 kb on + strand, within GFF707 at 387.153 kb on + strand, within GFF707 at 387.153 kb on + strand, within GFF707 at 387.154 kb on - strand, within GFF707 at 387.154 kb on - strand, within GFF707 at 387.192 kb on + strand, within GFF707 at 387.192 kb on + strand, within GFF707 at 387.208 kb on - strand, within GFF707 at 387.384 kb on + strand, within GFF707 at 387.384 kb on + strand, within GFF707 at 387.384 kb on + strand, within GFF707 at 387.384 kb on + strand, within GFF707 at 387.385 kb on - strand, within GFF707 at 387.385 kb on - strand, within GFF707 at 387.498 kb on + strand at 387.498 kb on + strand at 387.499 kb on - strand at 387.499 kb on - strand at 387.601 kb on + strand at 387.601 kb on + strand at 387.602 kb on - strand at 387.602 kb on - strand at 387.602 kb on - strand at 387.617 kb on + strand at 387.662 kb on - strand at 387.662 kb on - strand at 388.039 kb on + strand, within GFF708 at 388.039 kb on + strand, within GFF708 at 388.061 kb on - strand, within GFF708 at 388.214 kb on - strand, within GFF708 at 388.214 kb on - strand, within GFF708 at 388.214 kb on - strand, within GFF708 at 388.214 kb on - strand, within GFF708 at 388.214 kb on - strand, within GFF708 at 388.214 kb on - strand, within GFF708 at 388.214 kb on - strand, within GFF708 at 388.294 kb on + strand, within GFF708 at 388.294 kb on + strand, within GFF708 at 388.294 kb on + strand, within GFF708 at 388.294 kb on + strand, within GFF708 at 388.294 kb on + strand, within GFF708 at 388.294 kb on + strand, within GFF708 at 388.294 kb on - strand, within GFF708 at 388.295 kb on - strand, within GFF708 at 388.295 kb on - strand, within GFF708 at 388.295 kb on - strand, within GFF708 at 388.295 kb on - strand, within GFF708 at 388.295 kb on - strand, within GFF708 at 388.411 kb on + strand, within GFF708 at 388.412 kb on - strand, within GFF708 at 388.412 kb on - strand, within GFF708 at 388.412 kb on - strand, within GFF708 at 388.436 kb on - strand, within GFF708 at 388.436 kb on - strand, within GFF708 at 388.787 kb on - strand at 389.248 kb on + strand, within GFF709 at 389.458 kb on + strand, within GFF709 at 389.488 kb on + strand, within GFF709 at 389.488 kb on + strand, within GFF709 at 389.488 kb on + strand, within GFF709 at 389.488 kb on + strand, within GFF709
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 386,688 + GFF707 0.12 +0.6 386,688 + GFF707 0.12 -0.3 386,688 + GFF707 0.12 -0.8 386,688 + GFF707 0.12 +0.0 386,688 + GFF707 0.12 +0.1 386,689 - GFF707 0.12 -0.1 386,689 - GFF707 0.12 -0.3 386,689 - GFF707 0.12 -0.3 386,689 - GFF707 0.12 +1.0 386,689 - GFF707 0.12 +0.2 386,799 + GFF707 0.22 +0.4 386,800 - GFF707 0.23 -0.9 386,800 - GFF707 0.23 +0.1 386,850 + GFF707 0.27 -1.0 386,850 + GFF707 0.27 +0.2 386,850 + GFF707 0.27 +0.5 386,851 - GFF707 0.27 +0.8 386,880 + GFF707 0.30 +0.7 387,012 + GFF707 0.43 -0.0 387,012 + GFF707 0.43 +0.3 387,153 + GFF707 0.57 -0.3 387,153 + GFF707 0.57 +0.3 387,153 + GFF707 0.57 +0.7 387,153 + GFF707 0.57 +0.3 387,154 - GFF707 0.57 -0.1 387,154 - GFF707 0.57 +0.5 387,192 + GFF707 0.60 +0.5 387,192 + GFF707 0.60 +0.3 387,208 - GFF707 0.62 +0.3 387,384 + GFF707 0.79 -0.3 387,384 + GFF707 0.79 -0.2 387,384 + GFF707 0.79 -0.0 387,384 + GFF707 0.79 -0.7 387,385 - GFF707 0.79 -0.0 387,385 - GFF707 0.79 +0.3 387,498 + +0.6 387,498 + -0.4 387,499 - -2.0 387,499 - +1.5 387,601 + +0.1 387,601 + -1.3 387,602 - +0.3 387,602 - +0.2 387,602 - +0.3 387,617 + +0.1 387,662 - +0.3 387,662 - -0.8 388,039 + GFF708 0.39 +0.6 388,039 + GFF708 0.39 -0.4 388,061 - GFF708 0.41 -0.2 388,214 - GFF708 0.58 -1.2 388,214 - GFF708 0.58 -2.0 388,214 - GFF708 0.58 -0.5 388,214 - GFF708 0.58 -0.5 388,214 - GFF708 0.58 -0.8 388,214 - GFF708 0.58 -0.0 388,214 - GFF708 0.58 -0.0 388,294 + GFF708 0.66 -1.8 388,294 + GFF708 0.66 -0.8 388,294 + GFF708 0.66 -0.2 388,294 + GFF708 0.66 -0.8 388,294 + GFF708 0.66 -0.9 388,294 + GFF708 0.66 -0.6 388,294 - GFF708 0.66 -0.1 388,295 - GFF708 0.66 +0.6 388,295 - GFF708 0.66 -3.9 388,295 - GFF708 0.66 -0.5 388,295 - GFF708 0.66 -0.3 388,295 - GFF708 0.66 -0.7 388,411 + GFF708 0.79 -0.5 388,412 - GFF708 0.79 -0.2 388,412 - GFF708 0.79 +0.1 388,412 - GFF708 0.79 +0.9 388,436 - GFF708 0.82 +0.6 388,436 - GFF708 0.82 -0.0 388,787 - -0.7 389,248 + GFF709 0.52 -0.3 389,458 + GFF709 0.75 -1.5 389,488 + GFF709 0.78 -0.3 389,488 + GFF709 0.78 -1.9 389,488 + GFF709 0.78 -2.4 389,488 + GFF709 0.78 -1.3
Or see this region's nucleotide sequence