Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF642 and GFF643 overlap by 1 nucleotides GFF643 and GFF644 are separated by 29 nucleotides GFF644 and GFF645 are separated by 64 nucleotides GFF645 and GFF646 are separated by 36 nucleotides
GFF642 - twitching motility protein PilG, at 319,071 to 319,466
GFF642
GFF643 - twitching motility protein PilH, at 319,466 to 319,831
GFF643
GFF644 - type IV pili signal transduction protein PilI, at 319,861 to 320,400
GFF644
GFF645 - twitching motility protein PilJ, at 320,465 to 322,711
GFF645
GFF646 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 322,748 to 328,672
GFF646
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 319.547 kb on + strand, within GFF643 at 319.548 kb on - strand, within GFF643 at 319.688 kb on + strand, within GFF643 at 319.688 kb on + strand, within GFF643 at 319.689 kb on - strand, within GFF643 at 319.689 kb on - strand, within GFF643 at 319.689 kb on - strand, within GFF643 at 319.689 kb on - strand, within GFF643 at 319.772 kb on + strand, within GFF643 at 319.773 kb on - strand, within GFF643 at 319.773 kb on - strand, within GFF643 at 319.773 kb on - strand, within GFF643 at 319.979 kb on - strand, within GFF644 at 320.041 kb on + strand, within GFF644 at 320.042 kb on - strand, within GFF644 at 320.042 kb on - strand, within GFF644 at 320.042 kb on - strand, within GFF644 at 320.042 kb on - strand, within GFF644 at 320.056 kb on + strand, within GFF644 at 320.056 kb on + strand, within GFF644 at 320.057 kb on - strand, within GFF644 at 320.299 kb on + strand, within GFF644 at 320.299 kb on + strand, within GFF644 at 320.299 kb on + strand, within GFF644 at 320.299 kb on + strand, within GFF644 at 320.300 kb on - strand, within GFF644 at 320.300 kb on - strand, within GFF644 at 320.462 kb on + strand at 320.462 kb on + strand at 320.462 kb on + strand at 320.463 kb on - strand at 320.463 kb on - strand at 320.463 kb on - strand at 320.463 kb on - strand at 320.463 kb on - strand at 320.463 kb on - strand at 320.470 kb on + strand at 320.470 kb on + strand at 320.470 kb on + strand at 320.470 kb on + strand at 320.470 kb on + strand at 320.471 kb on - strand at 320.471 kb on - strand at 320.471 kb on - strand at 320.753 kb on + strand, within GFF645 at 320.753 kb on + strand, within GFF645 at 320.753 kb on + strand, within GFF645 at 320.753 kb on + strand, within GFF645 at 320.753 kb on + strand, within GFF645 at 320.753 kb on + strand, within GFF645 at 320.753 kb on + strand, within GFF645 at 320.754 kb on - strand, within GFF645 at 320.754 kb on - strand, within GFF645 at 320.754 kb on - strand, within GFF645 at 321.238 kb on + strand, within GFF645 at 321.623 kb on + strand, within GFF645 at 321.623 kb on + strand, within GFF645 at 321.624 kb on - strand, within GFF645 at 321.842 kb on + strand, within GFF645 at 321.843 kb on - strand, within GFF645 at 321.843 kb on - strand, within GFF645 at 321.843 kb on - strand, within GFF645 at 322.471 kb on + strand, within GFF645 at 323.120 kb on + strand at 323.121 kb on - strand at 323.450 kb on + strand, within GFF646 at 323.450 kb on + strand, within GFF646 at 323.450 kb on + strand, within GFF646 at 323.451 kb on - strand, within GFF646 at 323.451 kb on - strand, within GFF646 at 323.451 kb on - strand, within GFF646 at 323.688 kb on - strand, within GFF646
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 319,547 + GFF643 0.22 -0.2 319,548 - GFF643 0.22 +0.1 319,688 + GFF643 0.61 -0.0 319,688 + GFF643 0.61 -0.3 319,689 - GFF643 0.61 -2.9 319,689 - GFF643 0.61 -0.2 319,689 - GFF643 0.61 +0.7 319,689 - GFF643 0.61 +1.3 319,772 + GFF643 0.84 +1.0 319,773 - GFF643 0.84 -0.3 319,773 - GFF643 0.84 -0.3 319,773 - GFF643 0.84 -0.6 319,979 - GFF644 0.22 +0.3 320,041 + GFF644 0.33 -0.5 320,042 - GFF644 0.34 +0.5 320,042 - GFF644 0.34 +0.0 320,042 - GFF644 0.34 -0.1 320,042 - GFF644 0.34 +0.6 320,056 + GFF644 0.36 -1.7 320,056 + GFF644 0.36 -1.1 320,057 - GFF644 0.36 -0.1 320,299 + GFF644 0.81 -1.2 320,299 + GFF644 0.81 +0.6 320,299 + GFF644 0.81 +0.4 320,299 + GFF644 0.81 +0.1 320,300 - GFF644 0.81 +0.0 320,300 - GFF644 0.81 -0.3 320,462 + +0.5 320,462 + +1.0 320,462 + +0.5 320,463 - +0.7 320,463 - +0.2 320,463 - -0.1 320,463 - -0.2 320,463 - +0.7 320,463 - -0.7 320,470 + -0.0 320,470 + -0.3 320,470 + +0.9 320,470 + +0.1 320,470 + -0.1 320,471 - +0.3 320,471 - -2.7 320,471 - -0.7 320,753 + GFF645 0.13 -1.8 320,753 + GFF645 0.13 -1.1 320,753 + GFF645 0.13 +0.9 320,753 + GFF645 0.13 -0.3 320,753 + GFF645 0.13 +0.7 320,753 + GFF645 0.13 -0.1 320,753 + GFF645 0.13 -0.5 320,754 - GFF645 0.13 +0.7 320,754 - GFF645 0.13 +0.0 320,754 - GFF645 0.13 +1.7 321,238 + GFF645 0.34 +0.5 321,623 + GFF645 0.52 -0.3 321,623 + GFF645 0.52 -0.4 321,624 - GFF645 0.52 -1.1 321,842 + GFF645 0.61 -0.8 321,843 - GFF645 0.61 +0.1 321,843 - GFF645 0.61 -0.3 321,843 - GFF645 0.61 +0.8 322,471 + GFF645 0.89 -0.1 323,120 + +1.0 323,121 - +0.5 323,450 + GFF646 0.12 +0.2 323,450 + GFF646 0.12 -0.6 323,450 + GFF646 0.12 -0.3 323,451 - GFF646 0.12 +0.6 323,451 - GFF646 0.12 +0.7 323,451 - GFF646 0.12 -0.2 323,688 - GFF646 0.16 +1.3
Or see this region's nucleotide sequence