Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5840 and GFF5841 are separated by 53 nucleotides GFF5841 and GFF5842 are separated by 123 nucleotides GFF5842 and GFF5843 are separated by 2 nucleotides
GFF5840 - FIG00431931: hypothetical protein, at 38,506 to 39,735
GFF5840
GFF5841 - Aconitate hydratase X, predicted, at 39,789 to 40,211
GFF5841
GFF5842 - acetyl-CoA synthetase, at 40,335 to 42,347
GFF5842
GFF5843 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 42,350 to 43,486
GFF5843
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 39.370 kb on - strand, within GFF5840 at 39.575 kb on - strand, within GFF5840 at 39.583 kb on + strand, within GFF5840 at 39.583 kb on + strand, within GFF5840 at 39.825 kb on + strand at 39.876 kb on + strand, within GFF5841 at 39.877 kb on - strand, within GFF5841 at 39.888 kb on + strand, within GFF5841 at 40.076 kb on + strand, within GFF5841 at 40.077 kb on - strand, within GFF5841 at 40.234 kb on + strand at 40.265 kb on - strand at 40.462 kb on + strand at 41.091 kb on + strand, within GFF5842 at 41.130 kb on + strand, within GFF5842 at 41.333 kb on - strand, within GFF5842 at 42.320 kb on - strand at 42.741 kb on - strand, within GFF5843 at 42.765 kb on + strand, within GFF5843 at 42.774 kb on - strand, within GFF5843 at 42.777 kb on - strand, within GFF5843 at 42.797 kb on + strand, within GFF5843 at 42.809 kb on + strand, within GFF5843 at 42.809 kb on + strand, within GFF5843 at 42.809 kb on + strand, within GFF5843 at 42.810 kb on - strand, within GFF5843 at 42.810 kb on - strand, within GFF5843 at 42.810 kb on - strand, within GFF5843 at 43.055 kb on - strand, within GFF5843 at 43.160 kb on + strand, within GFF5843 at 43.172 kb on + strand, within GFF5843 at 43.173 kb on - strand, within GFF5843 at 43.173 kb on - strand, within GFF5843 at 43.317 kb on - strand, within GFF5843
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 39,370 - GFF5840 0.70 -0.2 39,575 - GFF5840 0.87 +0.6 39,583 + GFF5840 0.88 -1.1 39,583 + GFF5840 0.88 -0.5 39,825 + -0.3 39,876 + GFF5841 0.21 +0.2 39,877 - GFF5841 0.21 +0.2 39,888 + GFF5841 0.23 -0.2 40,076 + GFF5841 0.68 +0.0 40,077 - GFF5841 0.68 -0.4 40,234 + -0.2 40,265 - -0.6 40,462 + -0.9 41,091 + GFF5842 0.38 -2.9 41,130 + GFF5842 0.39 -0.7 41,333 - GFF5842 0.50 +0.0 42,320 - +0.3 42,741 - GFF5843 0.34 +1.3 42,765 + GFF5843 0.36 +0.7 42,774 - GFF5843 0.37 -0.7 42,777 - GFF5843 0.38 -1.9 42,797 + GFF5843 0.39 +0.1 42,809 + GFF5843 0.40 +1.3 42,809 + GFF5843 0.40 +1.7 42,809 + GFF5843 0.40 -0.1 42,810 - GFF5843 0.40 +0.4 42,810 - GFF5843 0.40 -0.2 42,810 - GFF5843 0.40 +0.9 43,055 - GFF5843 0.62 +0.1 43,160 + GFF5843 0.71 -0.5 43,172 + GFF5843 0.72 +0.5 43,173 - GFF5843 0.72 -0.9 43,173 - GFF5843 0.72 -0.7 43,317 - GFF5843 0.85 +0.0
Or see this region's nucleotide sequence