Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5826

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
20,825	-		GFF5825	0.51	+1.1
20,825	-		GFF5825	0.51	+1.7
20,825	-		GFF5825	0.51	-0.5
20,831	-		GFF5825	0.51	+0.4
21,004	+		GFF5825	0.62	-0.0
21,283	+		GFF5825	0.79	-1.5
21,284	-		GFF5825	0.79	+0.7
21,326	-		GFF5825	0.82	-0.4
21,469	+				-0.3
21,590	-				+0.3
21,766	-				-0.6
21,955	-				-0.7
21,990	+				-0.3
22,185	+		GFF5826	0.14	-0.1
22,312	-		GFF5826	0.17	+0.2
22,320	+		GFF5826	0.17	-0.1
22,320	+		GFF5826	0.17	-0.2
22,321	-		GFF5826	0.17	+0.5
22,392	+		GFF5826	0.19	-1.1
22,615	-		GFF5826	0.25	-0.1
22,647	+		GFF5826	0.26	+1.0
23,223	+		GFF5826	0.41	+0.1
23,380	-		GFF5826	0.45	+0.7
23,449	-		GFF5826	0.47	+0.1
23,764	-		GFF5826	0.55	+0.4
24,090	+		GFF5826	0.64	-0.2
24,192	+		GFF5826	0.66	+1.8
24,566	-		GFF5826	0.76	+0.6
24,795	+		GFF5826	0.82	+1.3
24,853	-		GFF5826	0.84	+0.2
25,021	-		GFF5826	0.88	-1.6
25,203	+				+0.3
25,320	+				-0.2
25,348	-				+0.8
25,453	-				-1.1
25,619	+				-0.7
26,211	-		GFF5827	0.46	+2.3
26,213	+		GFF5827	0.46	-1.8
26,390	+		GFF5827	0.58	+0.3
26,390	+		GFF5827	0.58	+0.3