Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5820 and GFF5821 are separated by 110 nucleotides GFF5821 and GFF5822 are separated by 3 nucleotides GFF5822 and GFF5823 overlap by 4 nucleotides GFF5823 and GFF5824 are separated by 195 nucleotides
GFF5820 - Nitric oxide-dependent regulator DnrN or NorA, at 14,558 to 15,256
GFF5820
GFF5821 - Nitrite-sensitive transcriptional repressor NsrR, at 15,367 to 15,879
GFF5821
GFF5822 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 15,883 to 17,799
GFF5822
GFF5823 - Nitrate/nitrite response regulator protein, at 17,796 to 18,488
GFF5823
GFF5824 - Nitrate/nitrite transporter, at 18,684 to 19,976
GFF5824
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 15.011 kb on - strand, within GFF5820 at 15.291 kb on - strand at 15.391 kb on + strand at 15.724 kb on + strand, within GFF5821 at 15.724 kb on + strand, within GFF5821 at 16.420 kb on + strand, within GFF5822 at 16.420 kb on + strand, within GFF5822 at 16.430 kb on - strand, within GFF5822 at 16.435 kb on + strand, within GFF5822 at 16.435 kb on + strand, within GFF5822 at 16.436 kb on - strand, within GFF5822 at 16.585 kb on + strand, within GFF5822 at 16.586 kb on - strand, within GFF5822 at 16.586 kb on - strand, within GFF5822 at 16.586 kb on - strand, within GFF5822 at 16.661 kb on - strand, within GFF5822 at 16.692 kb on + strand, within GFF5822 at 16.792 kb on + strand, within GFF5822 at 16.792 kb on + strand, within GFF5822 at 17.027 kb on - strand, within GFF5822 at 18.579 kb on - strand at 18.579 kb on - strand at 18.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 15,011 - GFF5820 0.65 -0.0 15,291 - +0.3 15,391 + -0.7 15,724 + GFF5821 0.70 -0.0 15,724 + GFF5821 0.70 +0.2 16,420 + GFF5822 0.28 +1.3 16,420 + GFF5822 0.28 +0.1 16,430 - GFF5822 0.29 -0.2 16,435 + GFF5822 0.29 +0.8 16,435 + GFF5822 0.29 -0.7 16,436 - GFF5822 0.29 -0.9 16,585 + GFF5822 0.37 -0.8 16,586 - GFF5822 0.37 +1.3 16,586 - GFF5822 0.37 +0.2 16,586 - GFF5822 0.37 -0.3 16,661 - GFF5822 0.41 +1.1 16,692 + GFF5822 0.42 +11.9 16,792 + GFF5822 0.47 -1.2 16,792 + GFF5822 0.47 -0.2 17,027 - GFF5822 0.60 +0.1 18,579 - +0.3 18,579 - -1.1 18,579 - +3.3
Or see this region's nucleotide sequence