Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5780

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,807,982	-				+0.9
2,808,430	+		GFF5779	0.50	+0.6
2,809,083	+		GFF5780	0.25	+1.2
2,809,084	-		GFF5780	0.25	+0.5
2,809,084	-		GFF5780	0.25	+1.2
2,809,552	+		GFF5780	0.84	-1.0
2,809,552	+		GFF5780	0.84	-0.2
2,809,573	+		GFF5780	0.87	+0.8
2,809,727	+				-1.3
2,809,727	+				+0.7
2,809,727	+				-1.3
2,809,727	+				-0.2
2,809,728	-				-0.6
2,809,728	-				+0.5
2,809,728	-				+0.7
2,809,728	-				-0.9
2,809,896	-				+0.4
2,809,917	+				-0.3
2,810,222	+		GFF5781	0.28	+0.2
2,810,222	+		GFF5781	0.28	-0.2
2,810,223	-		GFF5781	0.28	-0.2
2,810,223	-		GFF5781	0.28	+0.2
2,810,223	-		GFF5781	0.28	-0.8
2,810,223	-		GFF5781	0.28	-1.1
2,810,224	-		GFF5781	0.29	+0.1
2,810,293	-		GFF5781	0.68	-0.9
2,810,379	+				-0.8
2,810,380	-				-0.8
2,810,380	-				-0.9
2,810,380	-				+0.2
2,810,380	-				+0.1
2,810,586	+		GFF5782	0.23	-0.9
2,810,587	-		GFF5782	0.24	-0.2
2,810,587	-		GFF5782	0.24	-1.1
2,810,645	+		GFF5782	0.32	+0.8
2,810,667	-		GFF5782	0.36	+0.7
2,810,667	-		GFF5782	0.36	+0.1