Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF569 and GFF570 are separated by 12 nucleotides GFF570 and GFF571 are separated by 12 nucleotides
GFF569 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108), at 241,494 to 242,417
GFF569
GFF570 - hypothetical protein, at 242,430 to 242,606
GFF570
GFF571 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 242,619 to 244,172
GFF571
Position (kb) 242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 241.435 kb on + strand at 241.435 kb on + strand at 241.455 kb on + strand at 241.483 kb on - strand at 242.493 kb on + strand, within GFF570 at 242.493 kb on + strand, within GFF570 at 242.493 kb on + strand, within GFF570 at 242.493 kb on + strand, within GFF570 at 242.493 kb on + strand, within GFF570 at 242.494 kb on - strand, within GFF570 at 242.494 kb on - strand, within GFF570 at 242.604 kb on + strand at 242.604 kb on + strand at 242.604 kb on + strand at 242.604 kb on + strand at 242.604 kb on + strand at 242.604 kb on + strand at 242.604 kb on + strand at 242.605 kb on - strand at 242.605 kb on - strand at 242.605 kb on - strand at 242.822 kb on - strand, within GFF571 at 243.325 kb on + strand, within GFF571 at 243.325 kb on + strand, within GFF571 at 243.326 kb on - strand, within GFF571 at 243.326 kb on - strand, within GFF571 at 243.376 kb on + strand, within GFF571 at 243.376 kb on + strand, within GFF571 at 243.376 kb on + strand, within GFF571 at 243.376 kb on + strand, within GFF571 at 243.404 kb on - strand, within GFF571 at 243.404 kb on - strand, within GFF571 at 243.404 kb on - strand, within GFF571 at 243.415 kb on + strand, within GFF571 at 243.415 kb on + strand, within GFF571 at 243.415 kb on + strand, within GFF571 at 243.415 kb on + strand, within GFF571
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 241,435 + +0.0 241,435 + +1.0 241,455 + -0.1 241,483 - -0.1 242,493 + GFF570 0.36 +0.1 242,493 + GFF570 0.36 -0.5 242,493 + GFF570 0.36 +0.9 242,493 + GFF570 0.36 +0.6 242,493 + GFF570 0.36 -0.7 242,494 - GFF570 0.36 -1.2 242,494 - GFF570 0.36 -0.2 242,604 + -1.0 242,604 + +1.2 242,604 + +0.8 242,604 + +0.9 242,604 + -0.4 242,604 + +0.3 242,604 + -0.2 242,605 - -3.5 242,605 - +0.3 242,605 - -1.6 242,822 - GFF571 0.13 -0.0 243,325 + GFF571 0.45 -0.3 243,325 + GFF571 0.45 +0.7 243,326 - GFF571 0.45 -1.4 243,326 - GFF571 0.45 -0.2 243,376 + GFF571 0.49 -2.8 243,376 + GFF571 0.49 -0.0 243,376 + GFF571 0.49 +0.5 243,376 + GFF571 0.49 +0.7 243,404 - GFF571 0.51 +0.3 243,404 - GFF571 0.51 -0.5 243,404 - GFF571 0.51 -0.8 243,415 + GFF571 0.51 -0.2 243,415 + GFF571 0.51 -0.5 243,415 + GFF571 0.51 +0.2 243,415 + GFF571 0.51 +0.6
Or see this region's nucleotide sequence