Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5466

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,467,646	-				-0.1
2,467,655	+				-2.1
2,467,655	+				+0.0
2,467,656	-				-0.2
2,467,970	+		GFF5465	0.29	+0.2
2,467,971	-		GFF5465	0.29	-0.3
2,468,129	+		GFF5465	0.47	-0.4
2,468,130	-		GFF5465	0.47	-1.0
2,468,130	-		GFF5465	0.47	+0.7
2,468,205	-		GFF5465	0.55	+1.2
2,468,205	-		GFF5465	0.55	-1.3
2,468,211	-		GFF5465	0.56	+0.2
2,468,886	+		GFF5466	0.27	-1.3
2,468,887	-		GFF5466	0.27	-1.1
2,469,114	+		GFF5466	0.50	-0.6
2,469,115	-		GFF5466	0.50	+1.2
2,469,115	-		GFF5466	0.50	-0.9
2,469,115	-		GFF5466	0.50	+0.4
2,469,115	-		GFF5466	0.50	-0.2
2,469,166	-		GFF5466	0.56	-0.6
2,469,372	+		GFF5466	0.77	+0.6
2,469,373	-		GFF5466	0.77	-0.0
2,469,597	+				-0.3
2,469,955	+		GFF5467	0.50	+0.2
2,470,386	+		GFF5468	0.11	-0.3