Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5380

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,381,100	+		GFF5378	0.85	-0.1
2,381,100	+		GFF5378	0.85	-0.1
2,381,101	-		GFF5378	0.85	+0.4
2,381,101	-		GFF5378	0.85	+0.8
2,381,820	-		GFF5379	0.87	+0.6
2,381,942	+				+0.7
2,382,502	+		GFF5380	0.45	+0.4
2,382,503	-		GFF5380	0.45	+0.9
2,383,082	-				+1.0
2,383,082	-				-0.2
2,383,139	-				-0.9
2,383,139	-				-1.1
2,383,139	-				-0.2
2,383,198	+		GFF5381	0.19	+0.2
2,383,198	+		GFF5381	0.19	+0.3
2,383,198	+		GFF5381	0.19	+0.1
2,383,463	-		GFF5381	0.77	+0.3
2,383,728	+				+0.3
2,383,728	+				+0.5
2,383,729	-				-1.3
2,383,757	+				+0.2
2,383,757	+				+0.3
2,383,757	+				-0.5
2,383,758	-				-0.7
2,383,758	-				-1.6
2,383,758	-				+0.6
2,383,848	+		GFF5382	0.10	+0.8
2,383,849	-		GFF5382	0.10	+0.9
2,383,863	-		GFF5382	0.12	+0.1