Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5378

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,379,273	+		GFF5376	0.76	+0.1
2,379,730	+		GFF5377	0.22	-1.1
2,379,730	+		GFF5377	0.22	-1.2
2,379,820	+		GFF5377	0.37	-0.1
2,379,821	-		GFF5377	0.38	-1.0
2,379,919	+		GFF5377	0.54	-0.3
2,379,919	+		GFF5377	0.54	-1.1
2,379,919	+		GFF5377	0.54	+0.6
2,379,920	-		GFF5377	0.55	+0.6
2,379,920	-		GFF5377	0.55	+0.1
2,380,165	+				+1.4
2,380,165	+				+0.2
2,380,165	+				-0.7
2,380,165	+				+0.5
2,380,166	-				+1.8
2,380,166	-				+0.7
2,380,166	-				+0.1
2,380,166	-				+0.3
2,380,166	-				+0.1
2,380,183	+				-0.9
2,380,381	-		GFF5378	0.18	+0.3
2,380,476	+		GFF5378	0.27	+1.3
2,380,477	-		GFF5378	0.27	+1.8
2,380,477	-		GFF5378	0.27	+0.7
2,380,821	+		GFF5378	0.59	+1.3
2,380,821	+		GFF5378	0.59	-0.3
2,380,986	+		GFF5378	0.74	+0.7
2,380,986	+		GFF5378	0.74	+0.7
2,380,987	-		GFF5378	0.74	+0.4
2,380,987	-		GFF5378	0.74	+0.5
2,381,100	+		GFF5378	0.85	-0.1
2,381,100	+		GFF5378	0.85	-0.1
2,381,101	-		GFF5378	0.85	+0.4
2,381,101	-		GFF5378	0.85	+0.8
2,381,820	-		GFF5379	0.87	+0.6
2,381,942	+				+0.7