Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF528

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF526 and GFF527 are separated by 57 nucleotidesGFF527 and GFF528 are separated by 83 nucleotidesGFF528 and GFF529 are separated by 128 nucleotides GFF526 - Heat shock protease, at 193,729 to 194,607 GFF526 GFF527 - FIG01200701: possible membrane protein, at 194,665 to 195,342 GFF527 GFF528 - Transcriptional regulator, AraC family, at 195,426 to 196,520 GFF528 GFF529 - N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47), at 196,649 to 197,965 GFF529 Position (kb) 195 196 197Strain fitness (log2 ratio) -2 -1 0 1at 194.635 kb on + strandat 194.635 kb on + strandat 194.635 kb on + strandat 194.635 kb on + strandat 194.636 kb on - strandat 194.636 kb on - strandat 194.636 kb on - strandat 194.705 kb on + strandat 194.705 kb on + strandat 194.706 kb on - strandat 194.708 kb on + strandat 194.768 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.771 kb on + strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.772 kb on - strand, within GFF527at 194.810 kb on + strand, within GFF527at 194.810 kb on + strand, within GFF527at 194.810 kb on + strand, within GFF527at 194.811 kb on - strand, within GFF527at 194.811 kb on - strand, within GFF527at 194.828 kb on + strand, within GFF527at 194.828 kb on + strand, within GFF527at 194.828 kb on + strand, within GFF527at 194.829 kb on - strand, within GFF527at 194.837 kb on + strand, within GFF527at 194.838 kb on - strand, within GFF527at 194.838 kb on - strand, within GFF527at 194.838 kb on - strand, within GFF527at 194.939 kb on + strand, within GFF527at 194.945 kb on + strand, within GFF527at 194.945 kb on + strand, within GFF527at 194.946 kb on - strand, within GFF527at 194.946 kb on - strand, within GFF527at 194.957 kb on + strand, within GFF527at 194.957 kb on + strand, within GFF527at 194.979 kb on - strand, within GFF527at 194.979 kb on - strand, within GFF527at 194.979 kb on - strand, within GFF527at 195.017 kb on + strand, within GFF527at 195.017 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.179 kb on + strand, within GFF527at 195.180 kb on - strand, within GFF527at 195.355 kb on - strandat 195.362 kb on + strandat 195.409 kb on + strandat 195.428 kb on - strandat 195.787 kb on + strand, within GFF528at 195.787 kb on + strand, within GFF528at 195.787 kb on + strand, within GFF528at 195.788 kb on - strand, within GFF528at 196.081 kb on + strand, within GFF528at 196.081 kb on + strand, within GFF528at 196.081 kb on + strand, within GFF528at 196.081 kb on + strand, within GFF528at 196.082 kb on - strand, within GFF528at 196.082 kb on - strand, within GFF528at 196.082 kb on - strand, within GFF528at 196.082 kb on - strand, within GFF528at 196.082 kb on - strand, within GFF528at 196.084 kb on + strand, within GFF528at 196.085 kb on - strand, within GFF528at 196.085 kb on - strand, within GFF528at 196.085 kb on - strand, within GFF528at 196.548 kb on - strandat 196.578 kb on + strandat 196.578 kb on + strandat 196.579 kb on - strandat 196.599 kb on + strandat 196.600 kb on - strandat 197.018 kb on + strand, within GFF529at 197.018 kb on + strand, within GFF529at 197.018 kb on + strand, within GFF529at 197.019 kb on - strand, within GFF529at 197.019 kb on - strand, within GFF529at 197.019 kb on - strand, within GFF529at 197.019 kb on - strand, within GFF529at 197.022 kb on + strand, within GFF529at 197.022 kb on + strand, within GFF529at 197.022 kb on + strand, within GFF529at 197.023 kb on - strand, within GFF529at 197.258 kb on + strand, within GFF529at 197.258 kb on + strand, within GFF529at 197.258 kb on + strand, within GFF529at 197.259 kb on - strand, within GFF529at 197.516 kb on + strand, within GFF529at 197.516 kb on + strand, within GFF529at 197.517 kb on - strand, within GFF529at 197.517 kb on - strand, within GFF529

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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194,635 + +0.2
194,635 + +0.2
194,635 + -0.1
194,635 + -0.1
194,636 - -0.1
194,636 - -0.5
194,636 - +0.3
194,705 + +0.7
194,705 + -0.4
194,706 - +0.2
194,708 + +0.6
194,768 + GFF527 0.15 +0.4
194,771 + GFF527 0.16 -1.2
194,771 + GFF527 0.16 -0.4
194,771 + GFF527 0.16 -1.3
194,771 + GFF527 0.16 +0.1
194,771 + GFF527 0.16 +0.6
194,771 + GFF527 0.16 -0.0
194,771 + GFF527 0.16 -0.7
194,771 + GFF527 0.16 +1.7
194,771 + GFF527 0.16 -0.5
194,772 - GFF527 0.16 +0.2
194,772 - GFF527 0.16 +0.3
194,772 - GFF527 0.16 +0.1
194,772 - GFF527 0.16 +0.7
194,772 - GFF527 0.16 -0.0
194,772 - GFF527 0.16 +0.8
194,772 - GFF527 0.16 -0.2
194,772 - GFF527 0.16 -0.9
194,772 - GFF527 0.16 +0.5
194,772 - GFF527 0.16 +0.0
194,772 - GFF527 0.16 -1.3
194,772 - GFF527 0.16 +0.7
194,772 - GFF527 0.16 -1.1
194,772 - GFF527 0.16 -0.5
194,772 - GFF527 0.16 -0.4
194,810 + GFF527 0.21 +0.1
194,810 + GFF527 0.21 -2.6
194,810 + GFF527 0.21 +0.7
194,811 - GFF527 0.22 -0.7
194,811 - GFF527 0.22 -0.3
194,828 + GFF527 0.24 -1.1
194,828 + GFF527 0.24 -0.1
194,828 + GFF527 0.24 -1.3
194,829 - GFF527 0.24 +0.0
194,837 + GFF527 0.25 +0.4
194,838 - GFF527 0.26 +0.3
194,838 - GFF527 0.26 -0.5
194,838 - GFF527 0.26 +0.2
194,939 + GFF527 0.40 +1.7
194,945 + GFF527 0.41 -0.2
194,945 + GFF527 0.41 +0.1
194,946 - GFF527 0.41 -0.7
194,946 - GFF527 0.41 -0.1
194,957 + GFF527 0.43 -0.9
194,957 + GFF527 0.43 +0.6
194,979 - GFF527 0.46 -0.5
194,979 - GFF527 0.46 -0.2
194,979 - GFF527 0.46 -1.4
195,017 + GFF527 0.52 -0.8
195,017 + GFF527 0.52 +0.4
195,179 + GFF527 0.76 -1.1
195,179 + GFF527 0.76 -1.0
195,179 + GFF527 0.76 -0.8
195,179 + GFF527 0.76 +0.7
195,179 + GFF527 0.76 -0.2
195,180 - GFF527 0.76 +0.3
195,355 - +1.1
195,362 + -1.0
195,409 + +0.3
195,428 - +0.4
195,787 + GFF528 0.33 +0.8
195,787 + GFF528 0.33 -0.7
195,787 + GFF528 0.33 -0.2
195,788 - GFF528 0.33 -0.2
196,081 + GFF528 0.60 +0.3
196,081 + GFF528 0.60 +0.3
196,081 + GFF528 0.60 +0.4
196,081 + GFF528 0.60 -0.3
196,082 - GFF528 0.60 +0.1
196,082 - GFF528 0.60 +0.2
196,082 - GFF528 0.60 +0.4
196,082 - GFF528 0.60 +0.6
196,082 - GFF528 0.60 -0.2
196,084 + GFF528 0.60 +1.0
196,085 - GFF528 0.60 -0.5
196,085 - GFF528 0.60 -0.6
196,085 - GFF528 0.60 +0.3
196,548 - -0.6
196,578 + +1.3
196,578 + +0.3
196,579 - -0.2
196,599 + -0.5
196,600 - +0.4
197,018 + GFF529 0.28 +0.1
197,018 + GFF529 0.28 +0.2
197,018 + GFF529 0.28 -0.4
197,019 - GFF529 0.28 +0.7
197,019 - GFF529 0.28 -0.5
197,019 - GFF529 0.28 -1.4
197,019 - GFF529 0.28 +0.0
197,022 + GFF529 0.28 -1.3
197,022 + GFF529 0.28 -0.1
197,022 + GFF529 0.28 +0.4
197,023 - GFF529 0.28 +1.3
197,258 + GFF529 0.46 +0.2
197,258 + GFF529 0.46 +0.0
197,258 + GFF529 0.46 +0.7
197,259 - GFF529 0.46 +0.9
197,516 + GFF529 0.66 +1.3
197,516 + GFF529 0.66 -1.0
197,517 - GFF529 0.66 -0.0
197,517 - GFF529 0.66 +0.8

Or see this region's nucleotide sequence