Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5243

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,257,955	+		GFF5242	0.31	+0.7
2,257,956	-		GFF5242	0.32	-0.3
2,258,021	+		GFF5242	0.37	-1.8
2,258,030	+		GFF5242	0.38	+0.8
2,258,030	+		GFF5242	0.38	-1.0
2,258,031	-		GFF5242	0.38	+0.4
2,258,378	+		GFF5242	0.66	-0.6
2,258,378	+		GFF5242	0.66	-0.7
2,258,378	+		GFF5242	0.66	+0.0
2,258,379	-		GFF5242	0.66	-1.8
2,258,432	+		GFF5242	0.71	-0.3
2,258,433	-		GFF5242	0.71	+1.2
2,258,442	-		GFF5242	0.72	-0.5
2,258,442	-		GFF5242	0.72	-0.1
2,258,442	-		GFF5242	0.72	+0.1
2,258,442	-		GFF5242	0.72	-0.6
2,258,472	+		GFF5242	0.74	+0.3
2,258,507	+		GFF5242	0.77	-0.6
2,258,658	+		GFF5242	0.89	-0.5
2,258,666	+				+0.0
2,258,667	-				-0.3
2,258,744	+				+0.0
2,258,844	-				+0.7
2,258,844	-				+0.7
2,259,431	+		GFF5243	0.54	-0.6
2,259,503	+		GFF5243	0.60	-0.3
2,260,299	+		GFF5244	0.35	-0.2
2,260,560	+				-1.9
2,260,560	+				-0.4
2,260,560	+				-0.1
2,260,560	+				-1.3
2,260,561	-				-0.8
2,260,561	-				-1.1
2,260,561	-				-1.0
2,260,561	-				-0.1
2,260,656	+				-2.1
2,260,656	+				-1.0
2,260,657	-				-1.1
2,260,657	-				-0.5
2,260,657	-				-0.6
2,260,659	-				-0.3
2,260,668	+				+0.0
2,260,669	-				+0.1
2,260,669	-				+0.2
2,260,669	-				-0.6
2,260,731	+				-0.5
2,260,732	-				+0.2
2,260,732	-				-0.6
2,260,903	+		GFF5245	0.13	+0.3
2,260,904	-		GFF5245	0.13	-1.1