Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5232

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,247,635	+		GFF5231	0.31	-0.6
2,247,636	-		GFF5231	0.31	+0.5
2,247,749	+		GFF5231	0.42	+0.1
2,247,752	+		GFF5231	0.43	+1.0
2,247,752	+		GFF5231	0.43	+1.5
2,247,753	-		GFF5231	0.43	+0.7
2,247,998	+		GFF5231	0.67	+0.5
2,248,022	+		GFF5231	0.69	+0.5
2,248,022	+		GFF5231	0.69	+0.4
2,248,326	-				+0.8
2,248,501	+		GFF5232	0.15	+0.5
2,248,501	+		GFF5232	0.15	-0.6
2,248,501	+		GFF5232	0.15	-1.3
2,248,810	+		GFF5232	0.44	-0.2
2,248,810	+		GFF5232	0.44	+0.1
2,248,810	+		GFF5232	0.44	+0.4
2,249,119	+		GFF5232	0.73	-1.3
2,249,176	+		GFF5232	0.79	+0.5
2,249,177	-		GFF5232	0.79	-0.3
2,249,223	+		GFF5232	0.83	-0.3
2,249,223	+		GFF5232	0.83	-0.9
2,249,503	-		GFF5233	0.12	-1.6
2,249,680	-		GFF5233	0.53	-1.1
2,249,686	-		GFF5233	0.54	-2.3
2,249,960	+				-0.8
2,249,960	+				+0.8
2,249,961	-				-0.2
2,250,350	+		GFF5234	0.55	-0.3
2,250,351	-		GFF5234	0.56	+0.8