Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5127

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,137,471	+		GFF5126	0.33	-0.8
2,137,471	+		GFF5126	0.33	-0.1
2,137,472	-		GFF5126	0.33	+0.2
2,137,539	+		GFF5126	0.42	-0.2
2,137,539	+		GFF5126	0.42	-0.3
2,137,539	+		GFF5126	0.42	-1.0
2,137,539	+		GFF5126	0.42	+0.3
2,137,539	+		GFF5126	0.42	-0.7
2,137,540	-		GFF5126	0.42	+0.1
2,137,540	-		GFF5126	0.42	-0.4
2,137,540	-		GFF5126	0.42	+0.8
2,137,548	-		GFF5126	0.43	-0.2
2,137,668	-		GFF5126	0.58	+1.0
2,137,668	-		GFF5126	0.58	+0.1
2,138,173	-				-0.7
2,138,289	-				-0.5
2,138,318	+				+0.2
2,138,361	+				-0.2
2,138,361	+				-0.1
2,138,361	+				-0.8
2,138,361	+				+0.8
2,138,361	+				-0.6
2,138,361	+				+0.2
2,138,362	-				-0.1
2,138,362	-				-0.5
2,138,362	-				+0.2
2,138,362	-				-0.0
2,138,362	-				-1.1
2,138,362	-				+1.8
2,138,432	+				+0.7
2,138,432	+				+0.2
2,138,673	-		GFF5127	0.16	+1.0
2,138,673	-		GFF5127	0.16	+0.7
2,138,747	+		GFF5127	0.21	+0.1
2,138,834	+		GFF5127	0.27	+0.2
2,138,906	+		GFF5127	0.32	+0.7
2,138,907	-		GFF5127	0.32	-0.3
2,139,095	+		GFF5127	0.44	-0.3
2,139,095	+		GFF5127	0.44	-0.1
2,139,095	+		GFF5127	0.44	-1.0
2,139,096	-		GFF5127	0.44	+0.3
2,139,096	-		GFF5127	0.44	+0.1
2,139,713	+		GFF5127	0.85	+2.0
2,139,713	+		GFF5127	0.85	+0.9
2,139,714	-		GFF5127	0.86	+0.5
2,139,725	+		GFF5127	0.86	+0.7
2,139,726	-		GFF5127	0.86	+0.9
2,139,728	+		GFF5127	0.86	+0.6
2,139,728	+		GFF5127	0.86	+0.7
2,139,729	-		GFF5127	0.87	+0.5
2,139,729	-		GFF5127	0.87	-0.6
2,139,729	-		GFF5127	0.87	-1.0
2,140,018	-		GFF5128	0.12	+0.2
2,140,885	+		GFF5129	0.34	+1.2
2,140,885	+		GFF5129	0.34	+0.7
2,140,886	-		GFF5129	0.34	-0.2
2,140,886	-		GFF5129	0.34	+0.2