Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5087

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,101,455	+		GFF5086	0.12	+0.2
2,101,573	-		GFF5086	0.27	-0.2
2,101,573	-		GFF5086	0.27	+0.2
2,101,573	-		GFF5086	0.27	+0.1
2,101,591	-		GFF5086	0.30	-0.1
2,101,627	-		GFF5086	0.34	-0.2
2,102,106	+				+0.5
2,102,106	+				-0.2
2,102,106	+				-0.4
2,102,200	+				-0.7
2,102,219	+				+0.4
2,102,568	+		GFF5087	0.28	+0.4
2,102,569	-		GFF5087	0.28	+0.5
2,102,631	+		GFF5087	0.35	+1.1
2,102,853	+		GFF5087	0.58	-0.3
2,102,853	+		GFF5087	0.58	+1.0
2,102,853	+		GFF5087	0.58	-1.1
2,103,568	+		GFF5088	0.37	+0.0
2,103,568	+		GFF5088	0.37	-0.5
2,103,701	-		GFF5088	0.53	-0.5
2,103,841	+		GFF5088	0.70	-1.8
2,103,995	-		GFF5088	0.89	-0.0
2,104,165	+				+0.1
2,104,165	+				-0.2
2,104,166	-				+0.0