Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5053

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
2,068,614	-		GFF5051	0.66	+0.2
2,068,615	+		GFF5051	0.67	+0.4
2,068,616	-		GFF5051	0.67	-0.7
2,069,019	+		GFF5052	0.37	+0.8
2,069,019	+		GFF5052	0.37	+0.6
2,069,020	-		GFF5052	0.37	-0.0
2,069,020	-		GFF5052	0.37	+0.0
2,069,020	-		GFF5052	0.37	+0.0
2,069,193	+		GFF5052	0.69	+0.3
2,069,193	+		GFF5052	0.69	-0.8
2,069,193	+		GFF5052	0.69	-0.1
2,069,194	-		GFF5052	0.70	+0.3
2,069,194	-		GFF5052	0.70	-0.2
2,069,194	-		GFF5052	0.70	+0.5
2,069,194	-		GFF5052	0.70	-0.3
2,069,194	-		GFF5052	0.70	+0.4
2,069,370	-				+0.2
2,069,372	-				-0.1
2,069,374	-				+0.2
2,069,387	+				-0.3
2,069,416	-				+0.5
2,069,472	+				-0.1
2,069,474	+				+0.1
2,069,493	+				-1.8
2,069,493	+				+1.0
2,069,493	+				-1.1
2,069,494	-				+0.6
2,069,494	-				+0.1
2,069,494	-				-0.3
2,069,494	-				-0.2
2,069,913	+		GFF5053	0.51	+1.2
2,070,040	+		GFF5053	0.72	+1.0
2,070,040	+		GFF5053	0.72	+1.2
2,070,041	-		GFF5053	0.72	-0.7
2,070,041	-		GFF5053	0.72	-0.0
2,070,229	+				-1.2
2,070,229	+				-0.5
2,070,728	+		GFF5054	0.46	+0.4
2,070,728	+		GFF5054	0.46	+0.6
2,070,728	+		GFF5054	0.46	+0.3
2,070,728	+		GFF5054	0.46	-0.4
2,070,729	-		GFF5054	0.46	-0.5
2,070,729	-		GFF5054	0.46	+0.1
2,070,729	-		GFF5054	0.46	+0.3
2,071,145	+		GFF5054	0.88	+0.6
2,071,154	+		GFF5054	0.89	+1.2
2,071,154	+		GFF5054	0.89	+0.6
2,071,154	+		GFF5054	0.89	-0.4
2,071,154	+		GFF5054	0.89	-0.1
2,071,154	+		GFF5054	0.89	-0.0
2,071,154	+		GFF5054	0.89	+0.7
2,071,154	+		GFF5054	0.89	-0.4
2,071,154	+		GFF5054	0.89	+0.4
2,071,154	+		GFF5054	0.89	+0.3
2,071,155	-		GFF5054	0.89	-0.4
2,071,155	-		GFF5054	0.89	-0.3
2,071,155	-		GFF5054	0.89	+0.7
2,071,155	-		GFF5054	0.89	-0.8